Protein

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Genbank accession
YP_011109295.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,92
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSFFAGKFSDGKTVLSLTNSNGGDTSEHYSPGGNTIFHSDMPFVLVDGTYEATLGNAGNGYFVCQMPNDIINMKSNDPGRVILTAVEINGTHRGFLNGTQSQVGQFLAFFEDPPRAGAELGLTSAFAIGDSLAHGTYTYNGSLGHEESIARQGTGGSLSQVSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANGDYWDPNWMAPIGSAYRGHDHFYVCSSNIRGYVGKKKEVPSNVNVLYQSPTFPNLVYVCRGSTSNLAAQSSRAVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGTPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEFIGSSNGGLWSPVGYGGAASQISLYKFNAGKQWYVDTNTNTIGNEHGPVWSPSTVPLRLFPNNVASTYVGDDLNPSYPSAGDYYQPLSTVWLGLPNANSTIILTTEVIMGNINTAGQRISTYGGSAWQVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTAYSNTQTWASRPDEFAFRRNGYIYTIKNLGNGNVEFGVIIHAAEAAAIFLPRLRITVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 63957,40630 Da
isoelectric point:6,41391
aromaticity:0,12310
hydropathy:-0,20590

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_011109295.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011109295.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4193
Central domain 11 225 216 0,8431
C-terminal 226 593 367 0,7533
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-225
C-terminal
226-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage bobsandoy
[NCBI] 		2713284 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus bobsandoy
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011109295.1 [NCBI]
Genbank nucleotide accession
NC_092683 [NCBI]
CDS location
range 10620 -> 12401
strand +
CDS
ATGAGTTTTTTCGCAGGAAAGTTTAGTGATGGCAAAACAGTATTATCACTGACGAATAGCAACGGTGGGGACACCAGTGAACACTACAGTCCTGGTGGTAACACAATATTTCACTCTGATATGCCTTTTGTTTTAGTAGATGGAACATACGAGGCTACTCTAGGTAACGCAGGTAATGGTTACTTTGTTTGCCAGATGCCTAATGATATCATTAATATGAAGTCCAATGATCCTGGTAGAGTTATATTAACTGCTGTTGAGATTAATGGTACGCACAGAGGATTTCTTAATGGTACGCAAAGTCAAGTTGGTCAATTCCTGGCCTTCTTTGAAGACCCACCGCGTGCCGGTGCTGAACTAGGGTTGACATCTGCTTTTGCTATTGGGGATAGTCTAGCACATGGTACATATACCTATAATGGCTCCTTAGGTCATGAGGAATCTATAGCACGCCAAGGTACTGGAGGTTCATTATCTCAAGTATCTGGATTCCAAATATATAGACCTGGTGGTGTTTCGGCAGGTGAGGCTATTGCAAGAGCCTGGGCTCTTATAGGGTTCCCTAGTGGTGTATCAGTACCTCCACTTGATGCTGCAAATGGTGATTACTGGGACCCTAACTGGATGGCACCTATCGGTTCAGCATATAGAGGTCATGATCATTTTTATGTATGTAGTTCTAACATACGTGGTTACGTAGGTAAGAAGAAAGAAGTACCGTCTAATGTAAATGTATTGTATCAGTCACCAACTTTCCCTAACTTGGTATATGTATGTAGAGGTTCTACATCTAACTTAGCGGCTCAATCATCTAGAGCAGTTTATGTCCAAGATTGGTATAATGTTACTCCTACTAAAGTTATCTGGTATGTACTAAACTTACGTTACTCAAATGGCAATATGGGTGTTTCTGGAACTCCATTTACTGGTTCCGATATTCTTATATCCCCTTCAAACTTTACTATTAAAGGAGTTAGTCTACCAAATACAGGATATAAATTTATTAACCAGAATGCTTTCGGGAACTTAGGTTATCGCCCGGATATGGAGTATGTAGGTAACAACGCCGCGTACACTGGCGTTTTCGGTGATACAACTGCTCGATGCGAGTTCATAGGCTCTAGTAATGGAGGTTTATGGTCACCAGTAGGTTATGGTGGTGCTGCATCTCAGATTAGTCTATATAAGTTTAACGCGGGTAAGCAGTGGTACGTAGATACTAACACAAATACTATTGGTAATGAGCATGGTCCCGTATGGAGTCCTAGTACTGTACCCCTTAGACTATTTCCTAATAACGTTGCTAGTACGTATGTAGGTGATGATCTTAACCCCTCCTATCCTTCTGCTGGGGATTACTATCAACCACTATCCACAGTATGGTTGGGCCTACCAAATGCTAATTCTACTATTATATTAACTACTGAAGTTATTATGGGTAATATTAACACTGCTGGACAGCGTATTAGTACTTATGGGGGGAGTGCCTGGCAGGTGCAAGGGAGAAGACAACAGAGTTATACTGCCGGGGATGGTATATTCCATCAAATACTTACTTTGCCTCCTGGGTATCTAGTACCATATCATAGTACTACAGCGTATAGTAACACGCAGACTTGGGCAAGTCGTCCGGATGAATTTGCGTTTCGTAGAAATGGGTACATTTATACTATTAAAAATCTTGGTAATGGTAACGTTGAATTTGGTGTTATTATACACGCAGCTGAAGCAGCAGCTATATTCTTACCAAGACTACGTATAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
48da1d2b139efa93f4815a8b73a1d04348db804f94a8a55c7f2eb0d645160df2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2622
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank