Protein

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Genbank accession
XOB87523.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDLKKWQDPLMNSELQQDYNDNLVKLAGSLEKANQDMTHVNQRISNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVFDLMDKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLNSNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGYLYIAGLEETNTAGTTKNYFIKAIRCGFVRISKCRMAFNTKAIDPFTAVFIDACSADVNGCYFASQNVDVRGYNTARVEVQNIIHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLSGGGVVRT
Physico‐chemical
properties
protein length:341 AA
molecular weight: 37305,46110 Da
isoelectric point:4,83162
aromaticity:0,07918
hydropathy:-0,22053

Domains

Domains [InterPro]
DC_1253
STR
1–335
DC_1253
Coil
Unmapped
30–50
Coil G3DSA:3.30.1910.20
IPR011050
STR
124–300
IPR011050
XOB87523.1
1 341
Architecture
STR
STR 1-335 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOB87523.1
1 341
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,8966
Central domain 161 330 171 0,9399
C-terminal 331 341 10 0,7826
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-330
C-terminal
331-341

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage LMC
[NCBI] 		3397566 Viruses >
Host Listeria monocytogenes ATCC 19115
[NCBI] 		176281 Bacillota > Bacilli > Caryophanales > Listeriaceae > Listeria > Listeria monocytogenes

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOB87523.1 [NCBI]
Genbank nucleotide accession
PQ869677 [NCBI]
CDS location
range 34977 -> 36002
strand -
CDS
ATGGATTTAAAAAAATGGCAAGACCCACTCATGAACTCAGAACTACAACAAGATTATAACGACAATTTGGTAAAACTAGCTGGAAGCCTTGAAAAAGCTAATCAAGATATGACGCATGTAAATCAACGTATATCTAACTTAGTTATTAAATCCGGCGGAAATGAATCGAATGAAGTAGTAGACGCACGCGTTTCTTCTCTGGTTCCAGAAACTGAATTCACAACATTAAACGATAGAATAAATTACGCGGAAAATGCTTTAATAACAGGTGTTGGGAAGCTCTCAACGAATGTTTTTGATCTAATGGATAAGTACAACGATATAGATACTATTTTAAAGCGTTTATATGGCTTAGATAGCAGCAATATTGAAATATTTGTGGATGATGCAAGAGGCGATGATATTGCGGGGACTGGTGAAATTGATGCACCTTTTAAAACTATAAATAAAGCGGTAATGACTTTGCCCCGTGTATTGAATAGTAACTCTGTGAATATCTGGATTGTTCCCGGCAGATATAACGAAGACGTCGTTATTCCGCCAATCATGGGAGGAGACATCTATATTAGATCTACAAACTTTGAAACAGTAGACCCTACAAGCAGCACCGGATGCCAAGTTCGAAGTATTTCCGCAACAGGCAGTAACGGTTATCTATATATTGCTGGTTTAGAAGAAACTAACACAGCAGGAACAACAAAAAACTACTTTATCAAAGCAATAAGATGCGGTTTTGTAAGAATTTCAAAATGTAGGATGGCCTTCAACACTAAAGCAATAGACCCGTTCACCGCGGTGTTTATTGATGCTTGTTCTGCTGACGTTAACGGCTGTTACTTCGCTTCGCAAAACGTCGATGTGCGCGGTTATAACACTGCTAGAGTCGAGGTTCAGAATATCATCCATGGAGCAAAAAGCGCAATCGGTTTGTATCCTCAAAGTGCCGATATTTTCAATCTCAACAGCGGAACTTGGGAAGCTGATACGCCTACGAAACTGAGCGGCGGGGGAGTGGTTAGAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
26f1ca606c0b10a743b497dd9faae947b0c948f2e0f04923d2c5268803c4cc41
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8526
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50