Protein

View in Explore
Genbank accession
XOD32011.1 [GenBank]
Protein name
long-tail fiber proximal subunit
RBP type
TF
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MTVKVWGNQFSGESDTTRSTVFEVSDETSSHFYSQRNKAGNITFNINGTVTPINVNASGTLNANGVATFGSSVTANGEFISRSANAFRAINGDYGFIIRNDGSVTNFMLTASGDQTGGFNGLRPLSINNASGQVTIGESLIIAKGATINSGGLTVNSRIRSQGTKTSDLYTRAPTSDTVGFWSIDINDSATYNQFPGYFEMVEKTNEVTGLPYLERGEEVKSPGTLTQFGNTLDSLYQDWITYPTTPEARTTRWTRTWQKTKNSWSSFVQVFDGGNPPQPSDIGALPSDNAIMGNLTIRDFLRIGNVRIIPDPVNKTVKFEWVE
Physico‐chemical
properties
protein length:324 AA
molecular weight: 35289,51250 Da
isoelectric point:5,23961
aromaticity:0,10185
hydropathy:-0,40031

Domains

Domains [InterPro]
DC_0932
STR
1–254
DC_0932 DC_0003
IPR048390
ATT
14–127
IPR048390 IPR048391
XOD32011.1
1 324
Architecture
STR
ATT
STR
ATT
RBD
STR 1-13 | ATT 14-127 | STR 128-173 | ATT 174-272 | RBD 273-324
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb2
[NCBI] 		3387547 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD32011.1 [NCBI]
Genbank nucleotide accession
PQ666540 [NCBI]
CDS location
range 154590 -> 155564
strand +
CDS
ATGACTGTCAAAGTGTGGGGAAATCAATTTAGTGGGGAATCAGATACAACGCGTTCTACTGTATTTGAAGTTAGTGATGAAACGTCTAGTCATTTTTATTCTCAGCGTAATAAAGCTGGAAATATAACATTTAATATCAACGGTACAGTAACTCCGATAAATGTTAATGCTTCAGGAACATTGAATGCGAATGGCGTTGCAACATTTGGTAGTTCAGTTACGGCAAATGGTGAATTTATTTCTCGAAGCGCAAATGCTTTTAGAGCAATAAATGGAGATTACGGATTCATTATTCGCAATGACGGGTCAGTAACGAATTTTATGCTTACTGCATCGGGCGATCAGACTGGTGGATTTAATGGATTACGTCCATTATCTATTAATAATGCATCTGGTCAAGTAACGATTGGTGAAAGCTTAATCATCGCCAAAGGTGCTACTATAAATTCAGGTGGTTTAACTGTTAACTCGAGAATTCGTTCTCAGGGTACTAAAACATCTGATTTATATACTCGTGCGCCGACATCTGATACTGTAGGATTCTGGTCAATCGATATTAATGATTCAGCCACTTATAACCAGTTCCCGGGTTATTTTGAAATGGTTGAAAAAACTAATGAAGTGACTGGACTTCCATACTTAGAACGTGGCGAAGAAGTTAAATCTCCTGGTACGTTAACTCAGTTTGGTAACACACTCGATTCGCTTTATCAAGATTGGATTACTTATCCAACGACTCCAGAAGCACGTACTACTCGCTGGACGCGTACATGGCAGAAAACCAAAAACTCTTGGTCAAGTTTTGTTCAGGTATTTGATGGAGGTAACCCTCCTCAGCCATCTGATATCGGTGCTTTACCATCTGATAATGCTATAATGGGGAATCTTACTATTCGTGATTTCTTACGAATTGGTAATGTTCGCATTATTCCTGACCCAGTGAATAAAACTGTTAAATTTGAATGGGTTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
867564fae22fc2285ce31a176e5759b50946d2d32347f6611452f864795c4fed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7065
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50