Protein

View in Explore
Genbank accession
YP_009811534.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MSLTKINPALIDGGASPVGKVLGKKTATAVAFIDPAEAAKIPGSQGVEFDTTTGTLTVIWPDGSQSSVIGLPTADQLKSGREGKQGKEGLRGLPGADGRDGRDGEDGCPGPRGPRGRNGPTGNTGPVGATGNTGAVGPTGATGPTGSPGRDAAIDEYRVSQALNPVTGAVIPNAWIGSNRDMNTGFTHNMGRVVNASTTDTIHVVFNTAFINRCISIQITFVNAALNQAKTYQLYNLDGTSAMNENALLGGFTIKSTGTNTAGWDFWYTAVGD
Physico‐chemical
properties
protein length:273 AA
molecular weight: 27921,68280 Da
isoelectric point:6,13312
aromaticity:0,05861
hydropathy:-0,29780

Domains

Domains [InterPro]
DC_0452
ATT
1–59
DC_0452 IPR008160 DC_0380
PTHR24637
Unmapped
54–151
PTHR24637
YP_009811534.1
1 273
Architecture
ATT
STR
RBD
ATT 1-59 | STR 80-134 | RBD 152-273
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_AD1
[NCBI] 		2283029 Uroviricota > Caudoviricetes > Alexandravirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811534.1 [NCBI]
Genbank nucleotide accession
NC_048054.1 [NCBI]
CDS location
range 65674 -> 66495
strand -
CDS
ATGTCTCTTACGAAGATTAATCCTGCACTTATCGACGGCGGTGCTTCGCCTGTCGGTAAAGTGTTAGGTAAGAAGACGGCGACCGCTGTTGCGTTTATCGACCCAGCAGAGGCTGCAAAGATTCCCGGCTCTCAGGGTGTTGAGTTCGACACAACTACAGGTACGCTAACAGTCATCTGGCCTGATGGCAGTCAATCGAGTGTGATTGGTTTGCCTACTGCCGACCAGCTTAAATCAGGACGTGAAGGTAAACAGGGTAAAGAAGGTCTGCGTGGCCTCCCTGGTGCTGATGGTCGTGATGGTCGCGACGGTGAAGACGGCTGTCCAGGACCTCGTGGGCCTCGTGGACGTAACGGTCCTACAGGTAACACAGGCCCTGTAGGTGCTACAGGTAACACTGGTGCTGTCGGCCCTACGGGTGCAACAGGACCTACTGGTAGCCCAGGCCGCGATGCTGCTATTGACGAGTATCGTGTGTCTCAAGCGCTCAACCCTGTTACCGGTGCAGTGATACCGAACGCATGGATTGGTAGCAACCGCGATATGAACACTGGCTTTACTCATAACATGGGTCGAGTCGTGAACGCATCAACTACCGACACAATTCATGTTGTGTTTAACACGGCATTCATCAACCGTTGTATCAGCATTCAGATTACCTTTGTGAACGCTGCACTCAACCAAGCGAAGACCTACCAGCTCTACAATCTGGATGGTACAAGCGCGATGAATGAGAACGCCCTGTTAGGCGGCTTCACCATCAAGTCTACTGGCACCAACACTGCTGGCTGGGACTTCTGGTATACTGCGGTAGGTGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
19b0b2237b5754cc827a66fe07138d2d3adab2612864a2941dc8f8ad031bc598
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6942
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank