Protein

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Genbank accession
AFV81358.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSLTTIIDDLISKVNNAFGVIDGKLRGKAEKTEVYTRTYLDNPVNTLGANAATASQLKAARLIALGGDAQGSAGFDGSANITLLVTVPELANKADKLDTLTPAEIDSRIQAVISTAPAALDTLKELADALGNDPNFAGTITTELAKKANLVDVYTMTAADAKFLTKTGKAADTTLFAGKAESHFATKTEHDGLSSDLSSALQQLATAFQNGADQISGVGQ
Physico‐chemical
properties
protein length:220 AA
molecular weight: 22745,23530 Da
isoelectric point:4,81156
aromaticity:0,04545
hydropathy:-0,05591

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_MAR
[NCBI] 		1229754 Uroviricota > Caudoviricetes > Vhmlvirus >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV81358.1 [NCBI]
Genbank nucleotide accession
JX556417 [NCBI]
CDS location
range 12338 -> 13000
strand +
CDS
ATGTCTCTGACCACGATTATTGATGACTTGATCTCGAAGGTAAACAACGCCTTCGGGGTAATTGACGGCAAGCTGCGAGGCAAGGCCGAAAAGACCGAAGTATACACCCGGACTTATCTGGATAACCCGGTGAATACATTGGGTGCCAATGCTGCCACCGCCAGCCAGTTGAAAGCTGCCAGGCTGATTGCTCTGGGTGGTGATGCACAAGGTTCAGCGGGGTTTGATGGTTCTGCCAATATCACCCTGCTGGTGACGGTGCCGGAGCTGGCGAACAAGGCGGACAAGCTGGATACCCTGACACCGGCTGAAATTGACAGCCGTATTCAGGCGGTGATCTCAACCGCACCAGCGGCGCTCGATACCTTGAAAGAACTGGCGGATGCGTTGGGTAATGACCCCAACTTTGCCGGGACCATTACCACTGAGCTGGCCAAGAAGGCCAACCTGGTGGATGTGTACACCATGACGGCAGCGGATGCCAAGTTTTTAACCAAAACCGGCAAAGCCGCAGACACCACCCTGTTTGCGGGTAAGGCGGAAAGCCACTTTGCCACCAAAACCGAACACGATGGCCTGTCGTCTGACTTATCAAGCGCACTGCAGCAGCTGGCCACGGCTTTTCAGAATGGCGCTGACCAAATCAGCGGTGTAGGACAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
98ed64b35e2c2937faa95e1b346e0e861186189797e067bbb51771e296c624cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage vB_VpaM_MAR Alanis Villa,A., Kropinski,A.M., Abbasifar,R. and Griffiths,M.W. 2012 23118463 GenBank