Protein

View in Explore
Genbank accession
APZ81842.1 [GenBank]
Protein name
D-alanyl-D-alanine carboxypeptidase
RBP type
TSP
Evidence RBPdetect2
Probability 0,62
Protein sequence
MIPGAVAGTIPGVAAAVVSPPATNLKAWYDAADFDSLTLRDGEFVSQWDDKSGNGFHLVQATDANQPLFVDEGKPRVRLPGFPRRMTAPMTTTAQPITIVLVCSTEQATGGVFVDATSSSNRVVVGALSGSSNDFVMWAGSGSGVPSYGNQPAPFGLYVSTYNGASSTARRNGAQVATGNPGPQSMTGITLGCRYSIERFLPGDVYEMLIYSGALSASDLAALEQYLMTKWDVPLPPPPVSAQYVYVQDLDSGRSLYSKAADTATVTNAAASLAKMATALIVLDRKGSVLDSETVTVEAGDLPGAGNTLAGLEAGDVLTWRELLHGLIIPSGNDAALCIGRVIGTEIYAGTGTGTTGVTRFVEEMNALAASLGMANTTFGTPSGVGGDNFYTVRDINTLGRAFYRKALLRDISAKPTYDMTITGANARSEPTRHTSAVVSGPFSDQTQGLTDDNVIGSKTGSAPASNSYSINAVWVSPNGTKVLVTVLRSSTTYARYLDIRAIFYRLVKDYPYLAAGAPASASDPSFASTTLLIGADTAIVDESPLAQTVSVSGATRNSTNPIIGTHSIQTDGVDDRISVADGAGVSMGSGDWTLEFWYRGTGAEQSPASGLNAMAGKYSRSGNQREFGLVYATSNQFEIYCSGDGSTFEAAINALPGGNTEANIFFNGAARHFCIQRSGTEVALFINGEKQAATITFAGSIYDGTAPFMVGARASGAGIEDPTAGMFDEIRLTKGVARYPTAMFTPEPRPYPRS
Physico‐chemical
properties
protein length:755 AA
molecular weight: 78909,24500 Da
isoelectric point:4,92916
aromaticity:0,08477
hydropathy:-0,05391

Domains

Domains [InterPro]
DC_0797
STR
3–362
DC_0797 G3DSA:2.60.120.200
IPR013320
STR
93–224
IPR013320 IPR012338 IPR013320
IPR012338
STR
212–525
IPR012338 PF13385
IPR001967
ENZ
238–423
IPR001967
IPR000871
Unmapped
244–496
IPR000871
IPR018044
Unmapped
271–282
IPR018044 IPR018044
APZ81842.1
1 755
Architecture
STR
STR
STR 3-525 | STR 528-737 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APZ81842.1
1 755
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,3524
Central domain 63 261 200 0,5373
C-terminal 262 755 493 0,4119
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-261
C-terminal
262-755

Taxonomy

  Name Taxonomy ID Lineage
Phage Erythrobacter phage vB_EliS_R6L
[NCBI] 		1913119 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Erythrobacter litoralis
[NCBI] 		39960 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Sphingomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APZ81842.1 [NCBI]
Genbank nucleotide accession
KY006853 [NCBI]
CDS location
range 37589 -> 39856
strand -
CDS
ATGATCCCCGGCGCTGTTGCTGGAACCATCCCCGGGGTGGCGGCCGCCGTCGTCTCGCCTCCAGCCACAAACCTAAAGGCGTGGTACGACGCCGCCGATTTTGACTCGCTGACGCTTCGTGATGGCGAGTTCGTCTCGCAATGGGACGACAAGAGCGGCAACGGCTTTCACCTTGTTCAAGCCACCGATGCCAACCAGCCGTTGTTCGTCGATGAAGGAAAGCCGCGCGTTCGGCTCCCCGGCTTTCCGCGCCGCATGACGGCTCCGATGACGACGACCGCGCAACCCATTACGATTGTGCTGGTCTGTTCGACCGAGCAGGCGACGGGCGGCGTTTTCGTGGACGCGACAAGCTCCAGCAATCGGGTCGTAGTGGGGGCTTTGAGCGGCAGTTCTAACGACTTCGTTATGTGGGCGGGGTCGGGATCGGGCGTTCCGTCTTATGGGAACCAGCCGGCTCCCTTTGGTCTATATGTCTCGACCTATAACGGCGCGTCATCGACCGCGCGCCGCAATGGTGCGCAAGTCGCGACAGGCAATCCCGGTCCGCAAAGCATGACGGGGATCACCCTCGGTTGCCGCTATAGTATCGAGCGGTTCCTCCCCGGCGATGTTTACGAAATGCTGATCTATTCGGGCGCGCTTTCCGCGTCCGATTTGGCGGCGCTTGAGCAATATCTCATGACCAAGTGGGACGTTCCGCTGCCGCCACCGCCTGTGTCCGCCCAATATGTCTATGTGCAAGATCTCGACAGCGGCCGGAGCCTATATTCGAAAGCCGCCGACACCGCGACCGTCACGAACGCGGCGGCCAGCCTGGCAAAGATGGCGACGGCCCTGATCGTCCTCGACCGAAAGGGATCTGTTCTCGATTCGGAAACTGTGACCGTTGAAGCTGGCGATCTGCCGGGGGCCGGGAACACGCTGGCCGGATTAGAAGCCGGCGATGTTCTGACATGGCGAGAACTTCTCCACGGCCTGATCATTCCCTCGGGCAACGACGCCGCGCTGTGCATCGGCCGGGTGATCGGAACGGAAATATACGCCGGGACGGGGACCGGCACGACCGGGGTGACGCGGTTCGTCGAGGAAATGAACGCGCTCGCCGCCTCGCTTGGCATGGCGAACACGACGTTCGGCACGCCCTCGGGTGTGGGCGGCGACAATTTCTACACGGTTCGGGACATCAACACTCTGGGCCGGGCCTTCTATCGCAAGGCGTTGCTGCGCGACATTTCCGCAAAGCCAACCTACGACATGACGATCACAGGAGCGAACGCGCGCTCCGAGCCGACCCGTCACACATCGGCGGTCGTCAGCGGCCCCTTCTCGGACCAGACCCAAGGTTTGACCGATGACAACGTAATCGGCTCCAAGACGGGGTCCGCGCCGGCAAGCAACAGCTACAGCATCAACGCCGTATGGGTTTCGCCGAACGGCACAAAAGTGCTGGTGACGGTGCTTAGGAGTTCGACCACCTACGCCCGGTATCTTGATATCCGCGCGATCTTCTATCGGCTGGTCAAGGATTACCCCTATCTCGCCGCAGGCGCTCCCGCGTCGGCATCTGATCCCTCCTTCGCCAGCACGACCTTGCTGATCGGCGCGGACACAGCGATCGTGGACGAAAGCCCGCTGGCGCAGACCGTTTCGGTCAGCGGCGCGACGCGCAATAGCACCAACCCGATCATCGGCACGCATTCGATTCAGACCGACGGCGTGGACGACCGCATTTCCGTAGCCGACGGCGCGGGCGTCTCGATGGGAAGCGGCGACTGGACACTGGAGTTCTGGTATCGGGGCACCGGGGCCGAACAATCTCCTGCGAGCGGCCTGAACGCTATGGCTGGCAAGTATAGCCGCAGCGGAAATCAGCGAGAGTTCGGGCTTGTCTATGCGACCTCTAACCAGTTCGAAATCTACTGCTCTGGAGACGGCAGCACGTTCGAAGCCGCGATCAACGCCCTGCCTGGCGGAAACACAGAAGCCAACATTTTCTTTAACGGTGCGGCCCGTCATTTTTGCATTCAGCGCAGCGGAACCGAAGTCGCCTTGTTCATCAATGGGGAAAAGCAGGCCGCCACGATCACGTTCGCCGGCTCCATTTACGACGGCACCGCGCCCTTCATGGTTGGCGCGCGCGCTTCCGGGGCCGGCATCGAAGATCCGACGGCAGGCATGTTCGACGAAATCCGTCTCACCAAGGGCGTGGCGCGATATCCGACGGCCATGTTCACACCAGAGCCGAGGCCATATCCGAGAAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1abf8792cf55ff96ed684fe77a51a9932e18c8b5baf8b05ed0b4838dc4ca8908
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8537
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of the first phage of ecologically important marine bacteria Erythrobacter Lu,L., Cai,L., Zhang,R. and Jiao,N. 2017 28592325 GenBank