Protein

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Genbank accession
YP_009187304.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSLISQSIKNLKGGMSQQPDILRYPEQGALQVNGWSSETEGLQKRSPIMYNRALGAGNMLGAAPYVHLINRDEYEQYYAVFTGTDVKVFDMDGKEYAVRGDRQYVQSATPRDDLRMVTVADYTFIVNRKWVVRASGALTNNGGFRPDGDCLINVRGGQYGRTLEIFLNGVRAASYQIPDGKEPEHVKNTDAQFLAEELARQARTNIPSFTWNVGQGFIHVIAPPTDNIRSISTKDGYADQLINPVTHYAQSFNKLPINAPNGYMVQIVGDTSKTADQYYVTYDDGRKVWKESVGWNIKYAWDNRTMPWTMIRAADGNFDLVPQNWAGRNAGDDTTNPYASILDSRINDVFFFRNRLGFLTGENIVLSRTAKYFDFWPPSVANLSDDDPIDVAVSHNRVSILKYAVPFTEELLLWSDEAQFVLGASGILTSKSVELNLTTQFDVQDRARPYGIGRGVYFASPRASFTSINRYYAVQDVSSVKSAEDMTAHVPSFIPNGVFNIHGSSAENFASVLTSGAPSKIFIYKFLYIDEELRQQSWSYWDLGPGVTVLAASTIGSRMNLLLTNGLNTWSAYIMFTKDTVDIDSEPYRLYMDNKVEYRIPMDSYNEDANVSTIHLDHIYGMRFNTGRISVVEADGRIEQRDPPPQGWNQYPHIHLDGNMNGKVVFIGFNIPFRYEFSKFLIKKAADDGSTATEDIGRLQLRRAWVNYEDSGAFTIEVENLSRLFSYEMAGGRLGSDNLRVGRLNLGTGQYKFPVVGNAQYNTVRILSDNTTPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 88970,63870 Da
isoelectric point:5,63169
aromaticity:0,11742
hydropathy:-0,36957

Domains

Domains [InterPro]
IPR058003
TTP
1–792
IPR058003
YP_009187304.1
1 792
Architecture
TTP
TTP 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009187304.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9929
Central domain 142 346 206 0,3226
C-terminal 347 792 445 0,2381
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-346
C-terminal
347-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenP_AP10
[NCBI] 		1735591 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Apdecimavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009187304.1 [NCBI]
Genbank nucleotide accession
NC_028655 [NCBI]
CDS location
range 23835 -> 26213
strand +
CDS
ATGTCCCTCATTAGTCAATCAATCAAGAACCTTAAGGGCGGTATGTCTCAGCAGCCTGACATCCTGCGTTACCCTGAGCAAGGGGCCTTACAGGTGAACGGATGGTCCTCAGAGACTGAGGGCCTCCAGAAGCGCTCACCAATCATGTACAACCGTGCGTTAGGCGCTGGGAACATGCTGGGTGCTGCACCTTATGTCCACCTTATCAACCGTGATGAATACGAACAGTATTACGCCGTGTTCACCGGGACTGACGTTAAGGTGTTCGACATGGACGGTAAAGAATACGCTGTCCGTGGAGACCGTCAGTACGTTCAATCAGCTACACCGCGTGATGACCTGCGAATGGTCACAGTGGCTGACTATACGTTCATCGTTAACCGTAAGTGGGTCGTGCGTGCCTCAGGTGCCTTGACGAACAACGGCGGGTTCAGACCAGATGGCGACTGCCTGATTAACGTGCGTGGTGGTCAGTACGGTCGTACCCTTGAGATTTTCCTCAATGGTGTCCGTGCAGCCTCCTACCAGATTCCAGATGGTAAAGAACCTGAGCACGTTAAGAACACTGACGCTCAGTTCCTCGCTGAGGAGTTGGCTCGACAGGCTCGTACAAACATCCCATCGTTCACATGGAACGTAGGCCAAGGGTTCATCCACGTGATTGCCCCTCCTACTGACAACATCCGGTCTATCTCAACGAAGGACGGTTATGCTGACCAGTTGATTAACCCGGTGACTCACTACGCCCAGTCGTTCAACAAGTTGCCTATCAACGCCCCAAATGGCTACATGGTGCAAATCGTTGGGGACACCTCTAAGACTGCTGACCAGTATTACGTTACGTATGACGATGGTCGCAAGGTCTGGAAGGAGTCCGTGGGCTGGAACATTAAGTACGCTTGGGACAACCGGACGATGCCTTGGACGATGATTCGTGCTGCCGATGGTAACTTTGACCTCGTACCTCAGAACTGGGCTGGTCGTAACGCTGGGGATGACACAACGAACCCTTACGCATCCATCTTGGACTCTCGTATCAACGATGTGTTCTTCTTCCGCAACCGCCTAGGGTTCCTCACTGGGGAGAACATCGTGTTATCTCGTACAGCGAAATACTTTGACTTCTGGCCCCCGTCAGTAGCGAATCTCAGCGACGATGACCCTATCGACGTTGCAGTTAGCCACAACCGAGTGTCAATCTTGAAGTACGCCGTACCGTTCACTGAGGAACTCTTACTGTGGTCCGATGAGGCTCAGTTCGTTCTGGGTGCTTCTGGTATCCTGACGAGCAAGTCAGTCGAGTTGAACCTGACGACTCAGTTCGATGTACAGGACAGAGCGCGGCCATATGGCATCGGACGTGGTGTGTACTTTGCGTCACCCCGTGCCAGCTTCACGTCTATCAACCGTTACTATGCGGTACAGGATGTGTCCAGTGTCAAGAGCGCTGAGGATATGACCGCTCACGTTCCTAGCTTCATCCCTAACGGTGTGTTCAACATCCACGGGTCTAGCGCTGAGAACTTTGCGTCTGTCCTTACGTCTGGAGCGCCGAGCAAGATTTTCATCTACAAGTTCCTCTACATTGACGAGGAGTTACGCCAACAGTCTTGGTCCTACTGGGACCTTGGGCCGGGTGTGACCGTCTTGGCTGCGTCTACGATTGGCTCTAGGATGAACCTCTTGCTGACCAATGGTCTGAACACTTGGTCGGCGTACATCATGTTCACTAAGGACACGGTTGACATTGACTCTGAGCCTTACCGCCTGTACATGGACAACAAGGTTGAATACCGGATTCCTATGGACTCGTACAACGAGGATGCCAACGTCTCTACGATTCACCTAGACCACATCTACGGTATGCGATTCAACACTGGGCGCATCTCTGTGGTAGAAGCTGACGGTCGAATCGAGCAGCGTGACCCACCTCCTCAGGGTTGGAATCAGTACCCCCACATTCACCTTGATGGAAACATGAATGGTAAAGTGGTATTCATTGGGTTCAACATTCCGTTCCGCTATGAGTTCTCTAAGTTCCTCATTAAGAAAGCAGCAGACGATGGGTCAACCGCTACGGAAGACATCGGGCGCTTGCAGCTTCGCCGTGCTTGGGTGAACTACGAGGACTCTGGGGCCTTCACTATTGAGGTTGAGAACCTTAGCCGACTGTTCAGCTACGAGATGGCGGGTGGACGCTTAGGGTCAGACAACCTGCGAGTCGGTCGGTTGAACCTTGGGACTGGTCAGTATAAGTTCCCGGTAGTAGGTAACGCTCAGTACAACACTGTGCGCATCCTCAGTGACAACACAACGCCTCTCAACGTGATTGGTTGTGGTTGGGAAGGTAACTACATTCGTCGCTCAAGCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bce5e5cdf6cb72c4c188d9f0c162e04c95c5fb2b7b231e54f8c673f2778ca69a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8977
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_YenP_AP10 which infects Yersinia enterocolitica of serotype O:3 Leon-Velarde,C.G., Kropinski,A.M., Odumeru,J.A., Chen,S. and Johnson,R.P. 2014-10-28 — GenBank