Protein

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Genbank accession
YP_009799015.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSYKDSAHKNLLMGVSQQAPQDRLPGQLSEQLNMISDPVTGLRRRPGTEFIKALIMLDLGDKPRPKVYHTDINNRSVVFLVFPHLGSLYVFDDQTGELLQSYQDQAYLKSASAQALRLVTMGDEVFIANTGIKPSKLPATAGKDPDRFGYFYIPAGQYAKDFTVTFTNSKTGSSYIATYTTPEGRGESDAQRTSVHAIAWQLYGKIYGRAAQKLPNDPTKDDPSRPAVTADPALQPIRDATIASGLSMGYVGLQLSDAWSLTVTSNTGSGFLRTSGDMTIRASDELPASLPTTADYPATSGGTAFMDGVIVAAGTSANLTYFRWDAGTGRWKEDAAYGDGTGFQNMPHRLRWDSEGWAFGMPEYLKRPAGDIDSNPDFNFLKSAGITGLATFQGRLVFLSNEYACMSASNDPLRWYRRSATALADDDPVEVAAQGTLTAPYQYGITYNKDLILFSRRYQAVIPGGGVITPRTASLSVTTTYEADMSAVPFAAGRSLYFATPRSLGFVGIHEMSPSPSTDSHYVADDVTSHIPSYIPGPAAYITGASTSGFLVTGSDVDPADRLTVYQYIWAGADKVQQAWHRWELHKQILGVYFSGDTMMCIVYGAGQVILMRLNLRALTGQAGLPAPRYDMQRKVVCGAEGRLAVDTAYYHSVAHDLRVYRVTPGVGQFLERRIFDPVEVVGDQTSIPVPEAEVGHEYIIGHGYESSMEPSPPVVRDYNGVPITTTRATLRGYRVSYKDTGEFEYKIGDSVRPGQWIDTTPLRLFSRRLDAGQPFVDTAVVPLPARVDMLTSSLVLRADGPYDMNISSLEYGYKHNLRYRRA
Physico‐chemical
properties
protein length:823 AA
molecular weight: 90218,45370 Da
isoelectric point:6,05076
aromaticity:0,10450
hydropathy:-0,28019

Domains

Domains [InterPro]
IPR058003
TTP
1–822
IPR058003
DC_0058
STR
1–823
DC_0058
YP_009799015.1
1 823
Architecture
STR
STR 1-823
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799015.1
1 823
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9898
Central domain 142 354 214 0,1983
C-terminal 355 823 468 0,1794
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-354
C-terminal
355-823

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiNV3
[NCBI] 		2079544 Uroviricota > Caudoviricetes > Autographivirales > Krylovirinae > Kirikabuvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799015.1 [NCBI]
Genbank nucleotide accession
NC_047933 [NCBI]
CDS location
range 26712 -> 29183
strand +
CDS
ATGAGCTACAAGGACTCAGCCCACAAGAATCTCTTGATGGGCGTATCTCAGCAGGCACCACAGGACCGACTCCCCGGCCAACTATCCGAACAGCTCAACATGATCTCGGACCCTGTGACCGGCCTGCGTCGGCGACCGGGTACAGAGTTCATTAAGGCGTTAATCATGCTGGATCTGGGCGATAAGCCGCGCCCCAAGGTATACCACACGGACATCAACAACCGCTCGGTTGTGTTCCTTGTGTTCCCGCACCTTGGGTCCCTGTACGTGTTCGATGACCAGACCGGCGAGCTGTTGCAATCGTACCAAGATCAAGCGTACCTTAAGTCAGCCTCGGCACAGGCGCTGCGTCTAGTGACGATGGGTGATGAGGTGTTCATTGCGAACACCGGCATCAAGCCGAGCAAATTACCTGCCACCGCCGGTAAGGACCCCGATCGTTTCGGGTACTTCTACATCCCGGCAGGCCAGTACGCCAAAGACTTCACCGTGACGTTCACGAACTCTAAGACCGGCTCCTCGTACATTGCGACATATACCACCCCGGAAGGGAGGGGGGAGTCGGATGCGCAGAGGACCTCGGTACATGCGATTGCGTGGCAACTGTACGGTAAGATTTACGGGCGCGCTGCACAGAAGCTGCCGAACGATCCCACCAAGGACGACCCGTCCCGCCCTGCCGTAACTGCCGACCCAGCACTTCAGCCAATCCGAGATGCCACTATAGCGTCTGGTTTGAGCATGGGGTACGTCGGCTTGCAGCTCAGTGATGCTTGGTCCCTCACCGTCACATCTAACACCGGCTCCGGCTTCCTACGGACCTCGGGAGATATGACGATCCGAGCCAGCGACGAGCTGCCTGCGAGTCTGCCCACTACGGCGGACTACCCCGCAACCAGCGGCGGTACTGCTTTCATGGATGGCGTTATCGTGGCAGCCGGTACCAGTGCTAACCTGACGTACTTCCGTTGGGATGCTGGCACAGGTCGCTGGAAGGAGGATGCTGCGTACGGTGACGGGACTGGATTCCAGAATATGCCGCATCGACTCCGCTGGGATAGCGAGGGCTGGGCGTTCGGGATGCCTGAGTACCTGAAGCGACCGGCTGGCGACATCGACTCGAACCCAGACTTCAACTTCCTGAAGTCTGCTGGCATCACAGGGCTGGCCACCTTCCAAGGGCGGTTAGTGTTCCTGAGTAACGAGTACGCCTGCATGTCTGCGAGCAATGACCCGCTACGCTGGTACAGGCGATCCGCAACTGCCCTCGCTGACGATGACCCTGTAGAGGTTGCGGCACAGGGTACGCTGACCGCGCCGTACCAGTACGGGATCACCTACAACAAGGACCTGATCCTATTCAGTCGGCGGTACCAAGCAGTGATCCCCGGTGGCGGTGTTATCACCCCACGTACGGCCAGCCTGTCTGTGACGACGACGTACGAAGCAGACATGAGTGCCGTGCCATTTGCGGCGGGGCGTTCGCTGTATTTCGCCACACCGCGCTCGCTGGGCTTCGTAGGCATCCACGAGATGTCCCCGAGTCCAAGTACCGATAGCCACTATGTCGCTGACGATGTAACCAGCCACATCCCCTCATACATTCCGGGACCTGCTGCGTACATCACGGGCGCCAGTACCTCAGGGTTTCTCGTGACTGGTTCGGACGTTGACCCGGCTGACCGGCTCACGGTGTACCAGTACATCTGGGCAGGGGCTGACAAGGTGCAGCAGGCATGGCACCGCTGGGAGCTGCACAAGCAGATCCTCGGCGTGTACTTCAGTGGCGACACCATGATGTGCATCGTGTACGGCGCCGGGCAGGTTATCCTGATGCGGCTGAATCTACGGGCACTGACCGGGCAGGCTGGGCTACCAGCACCACGGTACGACATGCAGCGTAAGGTTGTGTGTGGTGCTGAGGGGCGGTTGGCTGTGGATACTGCGTACTACCACAGCGTGGCGCACGACCTCCGGGTGTACCGTGTCACGCCGGGAGTGGGTCAGTTCCTAGAGCGCCGCATCTTCGACCCTGTGGAAGTTGTTGGTGATCAGACCAGCATCCCGGTACCTGAGGCTGAGGTAGGGCATGAGTACATCATCGGGCACGGTTACGAGTCCTCAATGGAGCCGTCGCCGCCGGTGGTGCGGGACTACAACGGTGTACCTATCACAACGACCCGGGCGACACTGCGCGGGTACCGGGTGAGTTACAAGGACACCGGGGAGTTCGAGTACAAGATCGGTGACTCTGTTCGCCCCGGTCAGTGGATTGACACAACACCGCTCCGACTCTTCAGCCGTAGGCTTGATGCTGGTCAACCGTTCGTGGACACCGCCGTGGTGCCTCTACCTGCACGGGTAGACATGCTCACGTCTTCGCTGGTGCTTCGGGCAGATGGGCCGTACGACATGAACATCAGTTCACTTGAGTACGGGTACAAGCACAACCTACGGTACAGGAGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a7067e93c76ede6814a2a01919dd4c37f2658b448e54196e1f35576330092373
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8279
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome of phiNV3, a phiKMVvirus-like phage infecting Pseudomonas agarici Storey,N.H. 1997-10 — GenBank