Protein

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Genbank accession
YP_009883307.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSTKFKTVITTAGAAKLAAATVPGGKKINLNVMAVGDGGGKLPMPDAGQTQLVNEVWRHTLNKISQDNRYSNYIVAELVIPPEVGGFWMRELGLYDNEGTLIAVANMAESYKPELAEGSGRAQTCRMVIIVSSVESVALSIDSTMVMATQDYVDDRLAEHEKSRRHPDATLKEKGFTQLSNATDSESETLAATPKAVKAAYDLADGKYTAQDATTTRKGLVQLSNATDSVSETLAATPKAVKVAYDLANAKYTAQDATTARKGIIQLSNATDSTSETLAATPKAVKAAMDNANGRVPSDRKVNGHPLSGDITLWASDVKAISADAIGQITDNGTMASANTPGWWRVAVSNSDTVADFPTYPDGSKLYSYGYMFVEKIGEVWFQHYYAHMGANAKRQDWGTEPNTSRQWVIDYNTVNKPSASDVGALPITGGRLNGPLGIGTDNALGGNSIVFGDNDTGFKWHSDGVLGIYANSAQVGYIDNSGLHMLADIRATGVVRTGNGKTLTLSSGNNSALNAGLSLWGGGERPTVIELSDEQGWHLYSQRNTDGSISFTVNGIVYCNALNIGGAIYQNNGDIFGSLWGNGWLSTWIHNNVVKAVRLGPVALSGGLWRDFQLGGGQVVTGFHTDGSWEMEGNDDKVYYRPIQYLVGDTWVTAPSV
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70253,50490 Da
isoelectric point:5,39677
aromaticity:0,08055
hydropathy:-0,27538

Domains

Domains [InterPro]
IPR022225
ATT
1–151
IPR022225 IPR005068 IPR005068 IPR005068 DC_0128
IPR051934
Unmapped
1–201
IPR051934 DC_1371 G3DSA:6.20.70.20 DC_2105
DC_1371
STR
1–251
DC_1371
YP_009883307.1
1 658
Architecture
ATT
STR
RBD
ATT 1-151 | STR 152-366 | RBD 367-658
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009883307.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 437 437 0,7388
Central domain 438 636 200 0,3076
C-terminal 637 658 21 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-437
Central
438-636
C-terminal
637-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SW9
[NCBI] 		2592223 Uroviricota > Caudoviricetes > Peduoviridae > Eganvirus SW9 >
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009883307.1 [NCBI]
Genbank nucleotide accession
NC_049459.1 [NCBI]
CDS location
range 12185 -> 14161
strand +
CDS
ATGAGCACGAAATTTAAAACCGTTATCACCACTGCCGGAGCCGCTAAGCTTGCTGCGGCCACCGTGCCGGGCGGTAAGAAAATAAATCTTAACGTTATGGCTGTTGGTGACGGCGGCGGAAAACTGCCGATGCCTGATGCCGGTCAGACGCAGCTTGTTAATGAGGTCTGGCGCCACACTCTGAATAAAATCAGCCAGGACAACCGGTACAGTAATTACATTGTGGCCGAGCTGGTTATTCCGCCGGAAGTAGGTGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACAATGAGGGGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCCGAGGGCTCAGGGCGTGCGCAGACATGCCGCATGGTCATTATTGTCAGCAGTGTTGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGGATTATGTCGACGACAGGCTCGCCGAACATGAGAAATCACGTCGTCATCCTGACGCCACACTGAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACAGACAGCGAGTCTGAAACACTCGCAGCGACACCGAAAGCTGTTAAGGCAGCATACGACCTTGCTGACGGGAAATATACAGCTCAGGACGCCACCACAACGCGAAAAGGCCTTGTGCAACTCAGTAATGCTACTGACAGTGTGTCTGAGACGCTTGCCGCGACACCGAAAGCGGTCAAGGTGGCCTATGACCTTGCTAACGCAAAATATACAGCTCAGGACGCCACTACAGCGCGTAAAGGGATTATCCAGCTCAGCAATGCCACTGACAGCACGTCTGAGACGCTGGCCGCAACGCCGAAAGCGGTTAAAGCGGCTATGGATAATGCGAACGGACGCGTCCCGTCAGACCGTAAGGTCAATGGGCATCCATTATCCGGGGATATCACCCTGTGGGCGTCAGATGTGAAGGCTATTTCCGCAGATGCCATTGGACAGATTACCGATAACGGCACGATGGCATCAGCTAATACTCCAGGATGGTGGCGGGTGGCGGTGTCGAATTCTGATACGGTCGCTGATTTTCCGACCTATCCGGATGGCAGCAAGCTGTACAGCTACGGATATATGTTTGTTGAGAAAATTGGAGAAGTCTGGTTTCAGCACTATTACGCGCATATGGGCGCGAACGCAAAGCGCCAGGACTGGGGAACGGAACCGAATACCAGCCGCCAGTGGGTTATTGACTACAACACCGTAAATAAACCTTCAGCCAGTGATGTGGGTGCATTGCCGATTACCGGGGGGCGGCTTAACGGCCCACTGGGTATTGGTACTGACAATGCACTGGGCGGTAATTCGATTGTATTCGGCGATAACGATACAGGGTTTAAGTGGCACAGTGACGGCGTTCTGGGTATTTATGCCAATAGTGCCCAGGTCGGTTATATCGACAATTCCGGGCTGCACATGCTGGCAGATATTCGCGCTACTGGTGTCGTGCGCACCGGCAACGGAAAAACACTGACGTTATCGAGTGGTAACAATTCTGCACTGAATGCTGGTTTAAGTCTGTGGGGAGGTGGAGAACGTCCAACAGTCATTGAGCTGAGCGATGAACAGGGATGGCATTTATACAGTCAACGAAATACGGACGGAAGTATTTCATTTACTGTTAACGGTATCGTCTACTGTAACGCGTTAAATATAGGTGGCGCTATTTATCAGAATAACGGTGATATCTTTGGTTCGTTATGGGGAAATGGCTGGTTAAGTACATGGATTCACAACAATGTAGTAAAAGCGGTCAGACTTGGCCCCGTGGCGCTTTCTGGCGGTCTGTGGCGTGATTTTCAGCTTGGCGGCGGACAGGTGGTGACGGGGTTCCATACTGACGGTAGCTGGGAAATGGAAGGTAACGATGACAAGGTTTATTACCGTCCCATTCAGTATCTGGTTGGTGATACGTGGGTAACAGCCCCAAGTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
221b7e3fea331ac42c98f49933545a829ab24a41c340b6340eef109cfe6a00e6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7873
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
https://www.youtube.com/watch?v=d6_9CF1ucoI Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 1995-12 — GenBank