Protein

View in Explore
Genbank accession
AUR98431.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATPGGLVDKQELIDAQLDTAHLGRVVNSKDASGAPISTSTNRTGGVNKTLDALEAEYLTAIQGAGGVSIGTWTSGVTTFTEYNEYSVFNGIPYKPRTSATLPYVAQGVDPTVAPDDANVQPYVELSPSTLSNYTDIVYKASGGNSAIDNMLTEFNLNPLMYAVGTVIKTGGTTWVYEDSTGPVTSDNFRAFNTVNVVDFGAVGDADLDTQTGTSDTDSFKAAIEAARKYNSTIYAPSAGTRKGYLIDDTLFFGPKQEADVAVFPPRNVCLGLVGSGDESTYLVCGAGISGKVLLDYTGLGHKYASGFGIWSEIEAQAPSVGILTARFKKNVGVTGNYGGQFKDVAMFKYFTIAGRLAITTEETREERINIRNDHTDSYACFVSTSDGSSESYSGGPTWNALLGEQSQSALLREDVPGSNLHQTHIKCDYYYGNNSPDPLKNPAMLRIDGANGFSIRDPFFNNNTALIDCVQIRKAGAAGIPSAISVINPLYHQKTKCGVRVMTGLNRLDLEQSSTLPGFLFDEAELVIDGFLSGATVEAVNSVIQNEPIEDCTFSYVAASFNQGNTVTNCEMEAIGTYSQTNNSAISNSKVTCKEFTWNTDSTITNTDITVRNNLNALGSRGGSPKFFLTYKGSQYAIEGQIPSSWLGTPSGIPEDALSYSTTNLRTNQELYSRTVDKIVQKIGIENTGYSASMTQYEAPSGIGQDFNYVNAIRGGVQEFSLLRNGVTIHHLNVGGPVITSPNGSKYRIVVDDLGNLSTVSY
Physico‐chemical
properties
protein length:763 AA
molecular weight: 81721,68640 Da
isoelectric point:4,76870
aromaticity:0,09174
hydropathy:-0,23657

Domains

Domains [InterPro]
DC_1322
ATT
12–195
DC_1322 DC_0685
IPR012334
STR
192–288
IPR012334
IPR011050
STR
193–615
IPR011050
DC_1426
STR
241–763
DC_1426
AUR98431.1
1 763
Architecture
ATT
STR
ATT 12-195 | STR 196-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR98431.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,9932
Central domain 207 614 409 0,9851
C-terminal 615 763 148 0,9149
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-614
C-terminal
615-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.250.O._10N.261.55.E11
[NCBI] 		1881443 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR98431.1 [NCBI]
Genbank nucleotide accession
MG592617 [NCBI]
CDS location
range 56901 -> 59192
strand +
CDS
ATGGCAACTCCCGGTGGTTTGGTCGACAAGCAAGAGCTTATCGACGCACAACTCGACACGGCACACTTAGGTCGTGTCGTAAACTCTAAGGACGCTTCGGGCGCTCCTATCTCTACATCTACGAACCGTACAGGCGGCGTGAATAAAACACTCGACGCGCTTGAAGCGGAGTACCTTACTGCCATTCAAGGCGCAGGTGGCGTGTCGATTGGTACGTGGACTTCAGGCGTGACGACATTCACCGAGTATAACGAATACTCCGTGTTTAACGGTATCCCGTACAAACCTCGAACCTCCGCGACTCTGCCGTACGTAGCGCAAGGTGTCGACCCAACAGTCGCGCCGGACGACGCGAACGTGCAGCCTTACGTGGAATTGAGCCCCTCAACGTTATCAAACTACACAGATATAGTTTACAAAGCTTCAGGTGGTAATTCAGCTATAGACAATATGCTGACAGAGTTCAACCTAAACCCTCTTATGTACGCAGTCGGAACGGTAATCAAAACCGGCGGCACGACGTGGGTGTACGAAGACTCTACAGGACCTGTAACATCGGATAACTTCAGGGCGTTCAATACTGTTAACGTCGTTGATTTTGGCGCGGTAGGTGATGCAGACTTAGATACGCAGACAGGAACTTCTGATACGGATTCGTTCAAAGCAGCGATAGAGGCAGCGAGGAAGTATAATTCAACAATATACGCCCCGAGCGCCGGAACTCGAAAAGGCTACCTTATAGACGATACGCTTTTCTTCGGCCCTAAACAGGAAGCTGATGTTGCGGTTTTCCCGCCAAGAAACGTATGTCTAGGCTTGGTAGGCTCGGGGGATGAATCTACCTACCTAGTATGCGGGGCGGGTATCTCAGGTAAGGTTCTTCTGGATTACACAGGCCTAGGTCATAAATATGCAAGCGGCTTCGGGATATGGAGCGAAATAGAAGCTCAAGCACCTTCTGTTGGTATACTAACCGCAAGATTTAAAAAGAACGTAGGCGTAACAGGTAACTACGGCGGTCAGTTTAAAGATGTGGCTATGTTTAAATACTTTACCATCGCCGGAAGACTTGCAATAACGACCGAGGAGACGAGAGAAGAAAGGATTAATATAAGAAACGATCATACGGACTCTTACGCTTGTTTCGTTTCAACATCGGACGGCTCTAGTGAATCTTATTCGGGTGGTCCAACTTGGAACGCGCTACTAGGAGAGCAGTCTCAAAGCGCGCTTTTGCGTGAAGATGTTCCAGGTAGTAACCTACACCAGACACACATTAAATGTGATTACTACTACGGCAATAACAGCCCTGACCCACTGAAAAACCCTGCGATGCTTAGGATTGACGGAGCAAATGGGTTCTCTATTCGTGACCCGTTCTTTAATAACAACACCGCTCTGATTGACTGCGTTCAAATAAGAAAAGCCGGTGCTGCGGGTATTCCGTCAGCAATATCAGTGATAAATCCGCTGTACCACCAAAAAACAAAGTGTGGCGTAAGGGTTATGACAGGCTTGAATAGACTAGACCTAGAGCAGTCTAGCACCCTGCCCGGCTTCCTTTTCGATGAGGCTGAACTGGTTATAGACGGATTCCTAAGCGGGGCTACCGTAGAGGCCGTGAATAGCGTAATACAGAATGAACCCATAGAAGATTGCACATTCTCTTACGTAGCAGCGTCATTTAACCAAGGAAACACCGTAACCAATTGCGAAATGGAAGCTATTGGCACTTATAGCCAAACTAATAACTCCGCAATAAGTAACTCCAAGGTAACGTGTAAAGAGTTCACATGGAATACTGACTCTACCATCACAAATACGGACATTACAGTTAGGAATAATCTTAATGCGCTGGGAAGTAGAGGAGGGTCTCCTAAGTTCTTCTTGACTTACAAAGGGTCTCAATACGCGATAGAAGGTCAAATACCTTCATCGTGGTTAGGGACTCCTTCCGGTATTCCAGAAGATGCTCTTAGCTACTCAACAACCAACTTGAGAACCAATCAAGAACTATACTCACGTACGGTTGATAAGATAGTTCAAAAGATAGGCATAGAGAACACCGGATACAGCGCATCTATGACTCAATACGAAGCGCCTTCTGGAATTGGTCAGGATTTTAACTACGTCAACGCCATTAGGGGGGGTGTTCAAGAGTTTTCACTATTAAGGAACGGTGTAACTATCCATCACCTTAATGTCGGTGGTCCTGTGATTACATCCCCAAACGGGTCTAAGTATAGAATTGTTGTGGATGATTTAGGTAACTTATCTACGGTAAGTTACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
bc527d47563df275e0db75f41cf3b352f5faf9948c4452dd806bd5bcb2a68cf3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6271
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank