Protein

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Genbank accession
YP_009832067.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MDENQFSPFSTPLSPIRLQAQLGKETKRMIQEGKNIVRLSLARVVKVNYKYNTVDVITTLNNNSTVKNPNDNGRFSARLPVSFGGKTPDGNIYGANTLVTVGSLVLIGYMEGNKDYPIVLNIYGDADNQSQLTRTSFTSADESDEALQRELWQLFTLYPSMTYKNVDGNGNQEVTFSGKSFLYVTDTDQDNAYVQDAGFNYEDLPSSRYANGELIEPKSPYSPTLLYVHQGIYDKHRVTFFIKSDGTVRLGSKHTSGEGVTFFEMTTDGGFQVVQQKGTANPEETPEKFSKVGILEDGTVVMKSQKHVMEVNNDGVYIDGKAISAFVGGGSVPDGNGGTITLEDVVDSLKDVKTTITIQNGKIESKVGRTEYKIDLDAVKDYSKELFDGVSAEVDDINKSLENLDDLLDESFKDGIIEESEARSIGMYINNLNTQKSELDAKYNQIYTNKYLTGDPKTNLDNAKKDFDLKHQALIDVIQGAIVDGKITTEDREAINNAFDAYHKCVSTLSSAFEAATDAIALAMAKEAEDNAKDFVNGEIKKVNSTITQLADSISSKVESETFTETIKNVNSRIAETEESVSDTNKRVEEVEKKLPYACQIISTDGVAFQGGTYSTTLFAKITKGDQDITSSIDAKILRWTRISNDAAADEEWNKTHGIGVKSITVTNADVRARATFQCTFDTDDLGGG
Physico‐chemical
properties
protein length:689 AA
molecular weight: 75745,10690 Da
isoelectric point:4,72351
aromaticity:0,07983
hydropathy:-0,49187

Domains

Domains [InterPro]
DC_0209
STR
16–556
DC_0209 Coil
DC_0977
RBD
543–684
DC_0977
YP_009832067.1
1 689
Architecture
STR
RBD
STR 16-556 | RBD 557-684 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009832067.1
1 689
Domain Start End Length (AA) Confidence
N-terminal 1 168 168 0,6568
Central domain 169 678 511 0,1983
C-terminal 679 689 10 0,0717
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-168
Central
169-678
C-terminal
679-689

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage vB_BsuM-Goe3
[NCBI] 		1933063 Uroviricota > Caudoviricetes > Herelleviridae > Grisebachstrassevirus > Grisebachstrassevirus goe3
Host Bacillus subtilis
[NCBI] 		1423 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009832067.1 [NCBI]
Genbank nucleotide accession
NC_048652 [NCBI]
CDS location
range 53718 -> 55787
strand +
CDS
ATGGACGAAAATCAGTTTAGCCCGTTTTCCACTCCACTGTCCCCGATTAGGCTACAAGCCCAGTTAGGGAAAGAAACAAAACGGATGATTCAAGAGGGGAAAAATATTGTAAGGTTATCCTTAGCCCGGGTTGTTAAAGTTAACTATAAATATAATACAGTTGATGTAATCACGACTTTAAACAACAACTCCACAGTCAAAAACCCTAACGACAACGGAAGGTTTTCTGCCCGGCTCCCGGTGTCCTTTGGGGGTAAGACTCCGGATGGCAATATCTATGGAGCTAATACACTAGTTACTGTAGGGTCACTAGTTCTTATTGGTTACATGGAGGGGAATAAGGATTATCCAATCGTTTTGAATATCTACGGAGATGCGGATAATCAATCACAGTTAACCCGGACGTCGTTTACTAGTGCCGATGAGTCTGATGAAGCACTACAGCGAGAATTATGGCAACTATTTACTCTATACCCTTCGATGACCTATAAGAATGTTGACGGTAACGGAAACCAAGAGGTTACATTCTCAGGGAAGTCTTTTCTGTATGTAACAGACACGGATCAAGACAATGCGTATGTACAGGATGCCGGGTTTAACTATGAAGACCTCCCTAGTTCCCGCTATGCTAACGGAGAGTTAATTGAGCCGAAGTCTCCTTACTCTCCTACTTTATTATACGTCCACCAAGGTATCTATGACAAGCATAGAGTAACGTTCTTCATCAAGTCAGATGGTACCGTACGGCTGGGGAGTAAGCATACTTCAGGAGAAGGGGTTACTTTTTTTGAGATGACTACTGACGGAGGTTTCCAAGTAGTTCAACAAAAAGGAACTGCTAACCCTGAAGAGACGCCAGAGAAGTTTTCTAAAGTAGGCATCCTCGAAGATGGTACAGTAGTAATGAAGTCACAGAAGCACGTCATGGAGGTAAACAATGATGGCGTCTACATTGATGGAAAAGCTATTTCTGCCTTCGTAGGTGGAGGAAGTGTCCCGGACGGTAATGGTGGGACTATAACTTTAGAAGATGTAGTCGACAGCTTAAAAGATGTTAAGACAACCATTACAATACAGAATGGAAAAATAGAATCTAAGGTTGGAAGGACAGAGTATAAAATTGACTTAGATGCAGTCAAGGACTACTCTAAAGAGCTTTTTGATGGGGTAAGTGCAGAGGTAGATGACATTAATAAAAGTCTCGAAAACCTTGACGACCTTTTAGACGAGTCATTTAAAGACGGAATTATAGAAGAGTCAGAGGCTCGTTCTATCGGAATGTACATAAATAACTTGAATACTCAAAAGTCTGAACTAGATGCGAAGTATAATCAGATTTATACCAACAAATATTTAACCGGAGACCCTAAGACTAATCTCGATAACGCAAAAAAAGACTTTGATTTAAAGCACCAAGCTCTTATAGATGTCATCCAAGGTGCCATTGTTGACGGTAAAATCACTACTGAAGACCGAGAGGCAATCAACAACGCTTTTGATGCGTACCACAAGTGCGTATCTACCCTTTCCTCGGCTTTTGAAGCTGCAACGGATGCAATTGCACTGGCTATGGCTAAAGAGGCAGAGGACAACGCTAAAGACTTTGTAAACGGTGAGATAAAAAAAGTAAATTCAACAATCACTCAACTAGCAGATTCAATCAGCAGTAAAGTTGAATCGGAGACGTTTACAGAAACGATAAAAAATGTGAACTCTCGAATCGCCGAAACAGAGGAAAGTGTTTCAGACACGAATAAACGAGTAGAGGAAGTTGAAAAGAAGCTACCGTATGCCTGTCAGATAATAAGTACCGACGGAGTAGCTTTTCAAGGAGGAACCTATTCGACTACTCTTTTTGCCAAAATTACAAAAGGAGATCAGGATATCACATCTTCTATTGATGCCAAGATACTTAGATGGACTAGGATATCGAACGATGCGGCAGCTGATGAGGAATGGAATAAAACACACGGAATCGGAGTTAAGTCAATAACAGTCACTAATGCGGATGTTAGAGCACGAGCTACTTTCCAATGTACCTTTGACACCGATGATCTAGGAGGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
023fc7548b769d266e05e637e103aeb0f029928b65d928c0841a7653b4270853
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7010
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50