Protein

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Genbank accession
YP_007675396.1 [GenBank]
Protein name
amidase
RBP type
TSP
Evidence RBPdetect2
Probability 0,80
Protein sequence
MVRPKKKAPTRKGAEPTPKTPARAHTFPAPIRGWILNENVSMPQPAGALTLDNWICTTTGIKPRGGVATHVTLEAPATALFSYRSGGAEVFFGATASKIYDISAASETTPPVAVSGQTGGAYSTQQFGTAGGDYLYAVNGADSAQLYDGSTWTQIDDVSTPAITGVTTASLSNVWAFANRLFFVEAGTQNAWYLGVDSIGGAANEFSLAGIFKKGGSLLFGATWSLDAGDGLDDKCIFVSTEGEVAVYEGTNPGSAADWRKVGVYQITRPLGPKAIMQAGGDLLIANENGLVPISAAIQRDTAALELAAVSRAITPHWQSQVSVTGGSAWEIVKWPQQNIMVISQPNDPDNTALIANLQTGAWSRQTGWDTQCLGFYDESVFFGDSEGRVSRMETGGSDNGVPYTCVYIGQHEGMGAPGVEKTVSQVRATFKVATKIAPYVSAKTDYDQTPSLAPSAPANDTELGVWDVALWDEAAWDAAGLPETRARWSSVGRTGRTVAPEVQMTFGNTAKPLVELVSIDAAYDIGALVT
Physico‐chemical
properties
protein length:531 AA
molecular weight: 55967,86950 Da
isoelectric point:4,81366
aromaticity:0,09040
hydropathy:-0,11808

Domains

Domains [InterPro]
DC_0395
STR
4–531
DC_0395
YP_007675396.1
1 531
Architecture
STR
STR 4-531
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007675396.1
1 531
Domain Start End Length (AA) Confidence
N-terminal 1 399 399 0,7180
Central domain 400 520 122 0,0297
C-terminal 521 531 10 0,9908
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-399
Central
400-520
C-terminal
521-531

Taxonomy

  Name Taxonomy ID Lineage
Phage Sulfitobacter phage pCB2047-A
[NCBI] 		754045 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sulfitobacter sp. CB2047
[NCBI] 		1525218 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Sulfitobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007675396.1 [NCBI]
Genbank nucleotide accession
NC_020858 [NCBI]
CDS location
range 1432 -> 3027
strand -
CDS
ATGGTTCGCCCGAAGAAAAAGGCCCCGACACGCAAGGGGGCCGAGCCAACGCCGAAGACGCCCGCGCGCGCGCATACGTTCCCCGCGCCTATTCGTGGCTGGATTCTGAATGAGAACGTGTCGATGCCGCAGCCTGCCGGCGCTTTGACGCTGGATAACTGGATCTGCACCACGACAGGCATTAAGCCCCGTGGCGGTGTCGCAACGCATGTGACCCTGGAGGCCCCCGCAACCGCGCTGTTTTCTTACCGCAGCGGCGGCGCAGAGGTGTTTTTCGGGGCTACTGCGTCCAAGATTTACGACATCTCGGCAGCATCCGAGACAACGCCCCCCGTTGCGGTATCCGGCCAGACGGGCGGCGCATACTCAACGCAGCAATTCGGGACAGCGGGCGGGGATTACCTTTACGCGGTCAACGGGGCAGACAGCGCGCAGCTTTATGACGGCTCCACATGGACGCAGATTGACGATGTAAGCACGCCGGCAATCACGGGCGTTACCACGGCGTCACTGTCGAATGTGTGGGCCTTTGCCAACCGCCTGTTTTTCGTTGAGGCCGGCACGCAGAATGCTTGGTATCTCGGCGTTGACAGCATCGGCGGCGCGGCGAATGAGTTCTCCCTTGCGGGTATCTTCAAGAAGGGCGGTTCGCTCTTGTTCGGGGCCACGTGGTCCTTGGACGCGGGCGACGGTCTGGACGACAAGTGCATTTTCGTCAGCACCGAAGGCGAGGTGGCCGTTTATGAGGGTACGAACCCGGGCAGCGCCGCAGATTGGCGCAAGGTTGGCGTCTACCAGATCACGCGCCCCTTGGGCCCGAAAGCCATCATGCAAGCTGGTGGTGACCTTCTGATCGCAAACGAAAACGGCCTCGTGCCTATCTCGGCAGCAATCCAGCGCGACACGGCGGCGCTAGAGTTGGCAGCGGTGTCGCGGGCGATTACCCCGCATTGGCAAAGCCAAGTCTCCGTTACAGGCGGCAGCGCATGGGAAATCGTCAAATGGCCACAGCAAAACATCATGGTTATTTCGCAGCCGAATGACCCCGACAATACCGCGCTGATTGCCAACCTCCAGACGGGCGCTTGGTCGCGTCAAACCGGATGGGATACGCAATGCCTCGGGTTCTACGATGAAAGCGTGTTCTTCGGCGATTCCGAGGGCCGCGTGAGCCGCATGGAAACCGGCGGATCTGATAACGGCGTGCCATATACCTGCGTCTACATCGGTCAGCATGAGGGTATGGGCGCTCCAGGCGTTGAAAAGACCGTTTCGCAAGTGCGCGCGACGTTCAAGGTTGCCACCAAGATCGCGCCATATGTCTCAGCAAAGACTGACTACGACCAAACCCCGAGCCTTGCGCCTTCTGCGCCCGCGAATGACACCGAGCTAGGCGTCTGGGATGTGGCGCTATGGGATGAAGCTGCATGGGATGCCGCTGGCCTACCTGAGACGCGCGCGCGCTGGTCCTCTGTGGGCCGCACAGGACGCACGGTAGCCCCCGAGGTGCAGATGACCTTCGGGAACACCGCGAAGCCGCTGGTTGAGCTTGTTTCGATCGACGCCGCCTATGACATCGGCGCGCTGGTCACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
833a1db8b8c9af309dc422f9a4149f856191d52e03fb81796a3bb008fea1bf5e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9116
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Sulfitobacter phage pCB2047-A Henn,M.R., Buchan,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank