Protein

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Genbank accession
QPI17216.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALVSQSIKNLKGGISQQPDILRYPEQGAVQINGWSSETQGLQKRPPLLFTKALGVAGYLGEKPYVHLINRDEFEQYFAVFTGSDVKVFDMTGHEYTVRGDRSYITVTNPREDLRMVTVADYTFVVNRTKVIKVSPVKSNGGTFRDDGDALINIRGGQYGRTLRVIINGTEAAKYQIPNGSAPEHVKNTDAQFLATTLQAQMVTNLGSAGWTFTVGQGYIHIQAPAGTAINTLTTEDGYADQLINPVTHYTQTFTKLPLNAPDGYLVKIVGDTSKTADQYYVVYDAKQKVWKETVGWNQLTSWDDQTMPWTLIRAADGNFDLKPQDWVDRKAGDDDTNPFPSLEDSQINDVFFFRNRLGFLSGENIVMSRTAKYFDFFPPSVANLSDDDPIDVAVSHNRVSILKYAVPFTEELLLWSDEAQFVLGAAGVLSSRSVELNLTTQFDVQNLARPYGIGRNIYFSSPRASYSSIERYYAVQDVTRVKSAEDVSAHVPSYIPNGVFSIHGSSTENFASVLTEGAKGKIFIYKFLYVDEVVRQQSWSHWDFGDNVTVYSAATIGSRMYTLMGNGVSCWLGEVNFTKDSVDIESEPYRLYIDNKTEYVIPAGSYNLDTNETTFSLTNVYGMASAKGAVSIVEPDGRTSYIPEPDGGWAVHPNISLPNDMSGIGVFVGFNIQFHYEFSKFLIKKSADDGSVATEDIGRLQLRRAWVNYEDSGAFTIQVENQSRMFQYEMAGGRLGSSNLRVGRLNVGTGQYKFPVVGNATYNVVRILSEATTPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88173,60880 Da
isoelectric point:5,26149
aromaticity:0,11587
hydropathy:-0,28249

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
QPI17216.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPI17216.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9935
Central domain 142 348 208 0,1267
C-terminal 349 794 445 0,1627
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage phiPccP-1
[NCBI] 		2768689 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium odoriferum
[NCBI] 		78398 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPI17216.1 [NCBI]
Genbank nucleotide accession
MW001769 [NCBI]
CDS location
range 24756 -> 27140
strand +
CDS
ATGGCATTAGTAAGCCAAAGCATTAAGAACCTTAAAGGTGGTATCTCACAGCAGCCAGACATCCTAAGGTATCCCGAACAGGGAGCCGTACAGATTAACGGCTGGTCGTCTGAGACCCAAGGCCTCCAAAAGAGACCCCCATTGTTATTCACTAAGGCCTTAGGGGTCGCTGGGTATCTAGGCGAGAAACCTTATGTCCACCTGATTAACCGTGATGAATTCGAGCAATACTTTGCGGTCTTCACAGGGTCAGACGTTAAGGTCTTTGATATGACAGGCCATGAGTATACGGTACGTGGTGACCGTTCATATATCACAGTGACTAACCCAAGGGAAGACCTAAGGATGGTCACAGTGGCTGACTATACGTTCGTAGTGAATCGAACGAAGGTCATCAAGGTCTCTCCAGTTAAATCCAATGGTGGGACTTTTAGGGATGATGGGGACGCCCTAATTAATATCAGGGGTGGGCAATATGGTAGAACCTTGAGGGTTATTATTAATGGGACTGAAGCAGCCAAGTATCAAATACCGAACGGTAGCGCTCCAGAGCACGTAAAGAACACTGATGCGCAGTTCTTAGCGACTACCCTTCAGGCTCAAATGGTTACTAACTTAGGGTCTGCCGGATGGACATTCACGGTAGGTCAAGGATACATTCACATTCAGGCACCAGCAGGTACAGCCATTAATACCCTCACCACAGAGGATGGCTATGCTGACCAATTGATTAACCCTGTGACCCACTACACTCAGACGTTCACTAAGCTCCCCCTTAACGCGCCTGATGGCTACCTTGTGAAAATCGTAGGGGACACCTCAAAGACTGCCGACCAGTATTATGTAGTTTATGACGCTAAGCAGAAGGTCTGGAAGGAGACCGTAGGTTGGAACCAATTGACCTCATGGGATGACCAGACGATGCCTTGGACTCTCATTAGGGCAGCAGATGGTAACTTCGACCTTAAGCCACAGGATTGGGTAGACCGTAAGGCTGGTGATGATGACACTAACCCGTTCCCCTCACTGGAGGATTCACAGATAAACGATGTGTTCTTCTTCAGGAATCGCTTAGGGTTCCTTTCAGGTGAGAACATTGTGATGAGTCGAACAGCTAAATACTTTGACTTCTTCCCACCGTCCGTAGCCAACTTAAGTGACGATGACCCGATAGATGTGGCGGTAAGTCATAACCGTGTGTCAATCCTGAAATATGCCGTTCCGTTCACTGAAGAGTTGCTCCTGTGGTCTGATGAGGCTCAGTTCGTTCTGGGAGCAGCTGGTGTCCTATCAAGTCGAAGCGTGGAGTTAAACCTTACGACACAGTTCGATGTGCAGAACCTAGCGAGACCTTACGGTATTGGGCGTAACATCTACTTCTCGTCACCTAGAGCCTCTTATAGCTCCATTGAGCGCTACTATGCAGTACAGGACGTTACTCGTGTTAAGTCTGCCGAAGATGTCTCAGCGCACGTTCCAAGCTACATCCCTAACGGTGTCTTCAGTATCCACGGGTCATCCACGGAGAACTTTGCGTCTGTCTTAACGGAAGGAGCTAAGGGCAAAATCTTCATCTATAAGTTCCTTTATGTAGACGAAGTGGTACGCCAACAGTCATGGTCTCATTGGGACTTTGGGGATAACGTCACGGTCTACTCAGCGGCTACCATAGGTTCCCGTATGTACACCTTGATGGGTAATGGTGTTAGTTGCTGGTTAGGTGAAGTGAACTTTACGAAGGATAGTGTTGACATTGAGTCTGAACCTTATCGACTCTACATAGATAACAAGACCGAGTATGTTATTCCAGCTGGTAGCTACAATCTGGACACCAATGAGACCACTTTCAGTCTAACCAATGTGTATGGCATGGCGAGTGCTAAAGGGGCTGTCTCTATTGTGGAACCTGACGGTAGGACTAGTTACATACCTGAGCCTGATGGGGGCTGGGCAGTTCACCCAAACATCTCACTTCCTAACGATATGTCTGGCATTGGGGTGTTCGTAGGGTTCAACATTCAGTTCCATTATGAATTCTCTAAGTTCCTCATTAAGAAGTCAGCTGATGATGGCTCTGTAGCAACGGAGGATATCGGTCGGTTACAGCTTCGGAGAGCTTGGGTCAACTATGAGGACTCTGGGGCGTTTACGATTCAGGTAGAGAACCAATCACGGATGTTCCAATATGAGATGGCTGGAGGTCGCCTAGGGTCTAGTAACCTAAGGGTGGGACGATTGAATGTAGGTACTGGACAATACAAGTTCCCTGTGGTTGGTAATGCTACTTATAACGTTGTGAGAATCCTTAGTGAAGCCACAACGCCACTTAACGTAATTGGCTGTGGATGGGAAGGTAACTACATTCGGAGGTCAAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
23558420f6fcb1b3e868039161b45752dff41e458728dcfb2a977bb1ce424bf0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3084
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biocontrol of Soft Rot Caused by Pectobacterium odoriferum with Bacteriophage phiPccP-1 in Kimchi Cabbage Lee,S., Vu,N.T., Oh,E.J., Rahimi-Midani,A., Thi,T.N., Song,Y.R., Hwang,I.S., Choi,T.J. and Oh,C.S. 2021 33917817 GenBank