Protein

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Genbank accession
YP_009853439.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,81
Protein sequence
MSYIIHPWNPFGDNEKSVVYNESISALGEERSLLVPRYGPFFEKDLILKDAQTGVELKPGRDFVFSYPFDDFIKYYSRTIYGGITLLESGRNRQLVLEQYKTIGEPFTQNDQDFIRLCSTIIHSERIADWSQVVNLPMEGFPSDPHEHEPDLTYNYHKFIEVMKAIDQGQRTEFNNPTVASQLVEHVTQAFKLAHPNATADDFNLGNVEDFGVATEADLQGNSDQLYLTLAKGRKLTEIILKELGIYPDDEPTAPGSDDELDKPLTLREALKLFTGKDSDLAEIDGRGKIARRNARNNLGLGDAATATIEQTVGQGLKALMSQKAITDALNLLVPQTRTINGMPLTKDITIDVNDNDSYSRDETDNLLNKKFDKSSVSQSTGSSTSAVMSQKATTDALNAKVPNTRKVNGKPLSSDVSLSPGDVGAYTKTQVNDLVNGRVPNGRTVNGKPLSANISLSAGDVGAYTKSEVNSKLGGKFDKSNITNYSGSSEVHVISQKGVTNYLNGKVPTSRTINGKPLTSNISLSASNVGAYTKSETDSRLNNKFDKAYISQGTGNNSLYVMSQKAVTDNLNKKVPTTRTVNGKALSSNITLNATDIGLSRVENKRWVKVKDASVSFNLRNGYRVYTGEVDTGLRLPYEDGRRFDKGRFRVIPETLGNITSSNANACWWGVDYEVVLKQYWNKGHQIWIKFYGSGAYISSGKISNYELYEWK
Physico‐chemical
properties
protein length:713 AA
molecular weight: 78800,08350 Da
isoelectric point:6,56015
aromaticity:0,08415
hydropathy:-0,54025

Domains

Domains [InterPro]
DC_0460
STR
1–502
DC_0460 DC_1447
YP_009853439.1
1 713
Architecture
STR
STR
STR 1-502 | STR 516-711 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Photobacterium phage PDCC-1
[NCBI] 		2664246 Uroviricota > Caudoviricetes > Chimalliviridae > Aphroditevirus > Aphroditevirus PDCC1
Host Photobacterium damselae subsp. damselae
[NCBI] 		85581 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Photobacterium > Photobacterium damselae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009853439.1 [NCBI]
Genbank nucleotide accession
NC_048821.1 [NCBI]
CDS location
range 88353 -> 90494
strand +
CDS
ATGAGTTACATTATCCACCCTTGGAACCCCTTTGGGGACAACGAAAAGAGTGTGGTATATAACGAATCGATCAGTGCGTTAGGTGAAGAGCGGAGTCTATTAGTCCCTCGTTACGGCCCGTTCTTTGAGAAGGATTTAATTCTCAAAGATGCGCAAACGGGTGTCGAACTAAAGCCGGGTCGAGATTTCGTTTTCAGCTACCCATTCGATGATTTCATTAAGTACTACAGTCGTACGATTTACGGTGGCATCACTCTGTTAGAGAGTGGTCGCAACCGCCAGCTGGTATTAGAACAATACAAAACAATCGGTGAACCGTTCACTCAGAACGACCAAGACTTTATTCGTCTTTGTTCTACGATTATTCACTCCGAACGCATTGCGGACTGGAGTCAGGTAGTTAACCTACCTATGGAGGGGTTCCCTTCCGATCCCCACGAACATGAACCGGACTTGACTTATAACTATCATAAATTCATCGAAGTGATGAAGGCGATAGACCAAGGTCAACGTACCGAGTTCAACAACCCGACGGTCGCTTCCCAATTAGTGGAACACGTCACCCAAGCCTTTAAACTCGCTCACCCTAATGCGACTGCCGATGATTTTAATCTCGGTAACGTAGAAGACTTTGGTGTTGCAACTGAGGCCGATCTTCAGGGTAACTCAGATCAACTTTATTTGACCTTAGCTAAAGGTCGTAAATTGACTGAGATCATCTTGAAAGAGCTAGGCATCTACCCTGATGACGAACCTACCGCTCCTGGTTCCGACGATGAGCTTGATAAACCACTTACCTTGCGAGAAGCCTTAAAACTATTTACAGGTAAAGACAGTGATTTAGCTGAGATCGACGGACGAGGTAAAATAGCTCGTCGTAATGCCCGCAATAACCTAGGGTTAGGGGATGCGGCAACCGCTACGATCGAACAAACTGTAGGTCAAGGTCTTAAAGCTCTGATGTCGCAAAAAGCGATAACCGATGCTTTAAACTTATTGGTACCTCAGACGCGTACCATTAATGGCATGCCGTTGACTAAAGACATTACTATTGATGTTAATGACAATGACTCTTACTCTCGCGATGAAACCGATAACTTACTTAATAAGAAGTTTGATAAGTCATCAGTGTCTCAGAGTACGGGCTCCAGCACATCAGCAGTTATGTCGCAGAAAGCGACCACAGACGCTCTTAACGCCAAGGTTCCTAATACCCGTAAGGTGAATGGGAAGCCGTTAAGTTCTGATGTTAGTCTGTCTCCTGGGGATGTCGGTGCGTACACCAAGACTCAAGTTAACGACTTGGTTAATGGTCGTGTACCGAATGGTCGAACCGTCAACGGTAAACCGTTAAGTGCAAATATCTCTTTGAGTGCGGGTGATGTCGGTGCTTACACTAAGTCTGAAGTTAACAGTAAGTTAGGTGGGAAGTTTGATAAGTCAAATATCACCAATTATTCAGGTTCTAGCGAAGTTCACGTTATTTCGCAAAAAGGTGTGACTAACTACCTTAACGGTAAAGTCCCTACCAGTCGTACCATTAACGGCAAACCTTTGACTTCCAACATCAGTTTATCGGCATCTAACGTTGGTGCTTACACCAAATCTGAAACTGACTCCCGTTTAAATAACAAGTTCGACAAAGCCTACATCTCTCAAGGTACGGGTAATAACTCGCTTTATGTGATGTCCCAAAAAGCAGTGACGGATAACCTTAATAAAAAGGTGCCAACTACTCGTACTGTTAACGGTAAGGCGTTGAGTTCTAACATAACCTTAAACGCTACTGACATCGGATTAAGTCGTGTTGAAAACAAACGTTGGGTCAAGGTGAAGGATGCATCGGTGAGTTTCAACCTACGTAATGGTTACCGTGTTTACACGGGTGAAGTCGATACCGGGTTACGTCTACCTTATGAAGACGGACGTCGTTTCGATAAAGGTCGCTTCCGTGTTATCCCAGAAACCTTAGGCAATATTACGTCCAGCAATGCTAACGCTTGTTGGTGGGGTGTTGACTATGAGGTGGTCCTGAAACAGTACTGGAACAAAGGACATCAAATCTGGATCAAGTTCTACGGCTCGGGTGCGTATATCTCTTCCGGTAAGATCAGTAACTACGAGTTGTACGAATGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7be4c1ac4c5f4a31854cc2ea5cfdbc82e0d6be92954ea62f2ba8dd4dddd07c49
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6581
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Draft genome sequence of Photobacterium phage PDCC-1 Quiroz-Guzman,E. 2021-10-07 — GenBank