Protein

View in Explore
Genbank accession
ASV43722.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MTITLSEVRGGFNTSTINSNFEKIEEALNSNVLSVKEGSNQMEQDLDMNSNRLINLPAPINPTEPLRLEDLKTLEGDVSGIVPTVIRHTGDGVTFDFDSGTKVVAGPFSTKVYLNGIRLFPEVDYTTIGTKVRFINYVPTSTDKVDIYSYAPLEVIGPVGPTGPQGQEGERGPSPQYEWEGTRIRFIQPDGTWGPYVDLVGEIGPVGPQGPQGNVGPQGDSVAIDAIGNFADRSTYDNSPAKFVFFAKDYVFGVTQAGELEVVSDGVTSQYTLPFEAAGPAEIVLYYGNSYQRIATYSVTNLTNLVLFNVPEAGVRIVARRQVVPNSVGALFIKLSNTSGDWSQPYPFGQGPQGIEGPQGPIGPVGPQGPRGPEGPQGQPGQTGPQGPIGPQGPEGPRGPMGPQGPEGDKGPQGDQGQRGSREWYIETTGTSWSQALIDAINPNPVIYDVGIQYNKSQGYSESRVYRGSGVWEQVELVQGFTIKVMNGVSATKLNIGSATVLSSTTFGGTDTPLNQARSFSVRLGVISTPFATSAMVSLEDLQVLLYAFSPSFQPTVQMTWSIRVNGSVVYESSRRAFVTADNTTYYGFSGGTWAFTIPSPREGNTIEVFLNGYVTSPGTNFKLSRVTTTGSQFSVVSLKA
Physico‐chemical
properties
protein length:641 AA
molecular weight: 68664,63820 Da
isoelectric point:4,73755
aromaticity:0,09672
hydropathy:-0,29173

Domains

Domains [InterPro]
DC_0258
STR
1–280
DC_0258 IPR008160 DC_0898
IPR050149
Unmapped
159–421
IPR050149
DC_1279
STR
260–393
DC_1279
ASV43722.1
1 641
Architecture
STR
RBD
STR 1-419 | RBD 422-641
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASV43722.1
1 641
Domain Start End Length (AA) Confidence
N-terminal 1 490 490 0,9973
Central domain 491 630 141 0,0154
C-terminal 631 641 10 0,9949
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-490
Central
491-630
C-terminal
631-641

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF23
[NCBI] 		1983603 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASV43722.1 [NCBI]
Genbank nucleotide accession
KY883657.1 [NCBI]
CDS location
range 1877 -> 3802
strand -
CDS
ATGACTATTACTCTTAGTGAAGTAAGAGGAGGCTTTAACACCTCCACAATCAACTCCAACTTTGAGAAGATTGAAGAAGCTCTAAACTCCAATGTTCTCTCGGTTAAGGAAGGTTCCAATCAAATGGAACAAGATTTGGATATGAACTCCAACCGTCTAATTAACCTACCTGCTCCAATCAACCCTACCGAACCTCTTCGACTGGAAGACCTTAAAACCTTAGAAGGTGACGTGTCTGGTATTGTTCCAACGGTGATTCGACACACTGGTGATGGAGTTACTTTTGACTTCGACAGTGGTACTAAGGTAGTTGCAGGTCCTTTCTCTACCAAAGTGTATCTAAACGGCATCCGTCTGTTTCCAGAAGTGGATTACACTACAATAGGCACAAAGGTACGGTTCATTAACTACGTTCCAACATCCACAGATAAGGTGGACATTTATTCGTATGCTCCACTTGAAGTAATAGGTCCGGTGGGTCCAACTGGCCCGCAAGGACAAGAGGGTGAGCGTGGCCCTTCTCCACAATATGAATGGGAAGGCACTCGTATTAGATTTATCCAACCAGACGGTACATGGGGTCCTTACGTAGACCTAGTGGGGGAGATTGGTCCTGTTGGCCCACAAGGTCCTCAAGGTAACGTTGGTCCTCAAGGTGACTCTGTTGCTATTGATGCTATTGGTAATTTTGCAGACCGTTCAACCTACGACAACTCCCCAGCTAAGTTTGTATTCTTTGCCAAAGATTATGTATTTGGTGTAACACAAGCAGGGGAATTGGAAGTAGTAAGTGATGGTGTAACCAGTCAATACACTCTACCTTTTGAGGCCGCTGGCCCTGCTGAGATTGTGTTGTACTATGGTAACTCTTACCAACGTATTGCTACTTACTCAGTAACTAACTTAACTAACCTAGTGTTATTTAATGTTCCAGAAGCTGGTGTTCGTATTGTTGCCCGTCGGCAAGTAGTTCCAAACTCTGTAGGTGCTTTGTTTATTAAATTGAGTAATACTAGTGGAGATTGGTCACAACCTTACCCATTCGGCCAAGGTCCACAGGGTATCGAGGGCCCACAAGGTCCAATCGGACCAGTAGGCCCCCAAGGGCCACGAGGACCAGAAGGTCCCCAAGGACAACCGGGTCAAACAGGTCCACAAGGCCCTATTGGGCCACAAGGTCCAGAAGGCCCGCGAGGTCCAATGGGACCACAGGGTCCAGAGGGAGATAAGGGTCCACAAGGGGACCAAGGTCAACGTGGTTCTCGTGAGTGGTACATCGAAACAACAGGCACAAGTTGGAGCCAAGCGTTGATTGACGCTATTAACCCTAATCCAGTTATCTATGATGTTGGTATCCAGTATAACAAATCACAGGGGTATTCTGAGTCCAGAGTGTACCGTGGTTCTGGAGTATGGGAACAGGTAGAGTTGGTTCAGGGATTCACAATCAAGGTGATGAATGGTGTAAGTGCTACCAAGTTAAATATTGGGTCAGCCACTGTATTATCCAGTACTACATTTGGTGGAACAGATACTCCACTTAACCAAGCACGGTCATTCAGTGTTCGTCTAGGAGTGATTAGTACCCCGTTTGCGACTTCTGCAATGGTTAGTTTGGAAGATTTACAGGTTCTGTTGTATGCATTTAGCCCCTCATTCCAGCCTACTGTTCAAATGACTTGGAGTATTCGAGTAAATGGTTCCGTAGTGTATGAGTCTTCTAGACGTGCTTTTGTTACCGCAGATAACACAACTTATTATGGTTTTTCTGGAGGAACTTGGGCATTTACTATTCCTTCTCCTAGAGAGGGAAACACTATAGAAGTTTTCCTAAATGGGTATGTAACTTCTCCGGGAACTAACTTTAAGTTAAGCAGAGTAACTACAACTGGCTCCCAATTTAGTGTAGTATCTTTGAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
077feca7553da6f1d0b71e057e1e1d83a2a4c23650c8fe1406d0275a87220a15
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6473
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50