Protein

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Genbank accession
AXH68348.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MGAVVSQSIPNFLNGMSQQTPTQRGLNQGEDQVNLQNGLVDGLSKRPPLEYVATVDASNIYSNKTKFWNIQRDDANQYIVALYNGGIKVFDLAGNSKTVTIQSGSSYLTSTNPKEHFKLVNIADYTFIANTQTTVTADSTTSAAKVEEFLIVCKLTNYGREYKVALNHPNMAYEHEVVFQLPSGNDASTDSKFRDTNKITDILLNGTSSSHWDSNANGIGFKTIRTDTGATLSSSQGLANYSGISSHFTFEAFDSVIYGKPTGTVSSPNTLADYTISSSDGSGNTAMYAIRDEIQDFSKLPFYGKKDVIIKVTGEEGDTLSDYYVKFTGKSGVWNETIAPATSVGVTNSTMPHALINNNNGTFTFKELDWTDRVCGDSETNANPTFVGKKINNLTFYKNRLGIMSGENLVLTENASFFNFFATTSTQVLDTDPIDIAASGTQVNTLKNSVGFNESLLLFSDTAQYKLDSSGESISPTTAILNEVSSFEHDDKVTPVSAGKFAYFAQARTNNTAIREYFADDDTLTNDGLDISVSVQNLIPSNCHQIVSNTTEDTLVFLSADDADSQTAPYTGTASATNASTMIIYKYFFDGGEKVQNAWSKWTFTGVKIIGVMSRESYLYVLASEGTTTKLFKIDLRNLKDTTIGHGVYLDLKTSVTGSYSSTTDKTTFTSPYGAKTGLIAVDRTDGNNYTATNTSGSTYTIDGNHTSLYIGVPYESKYRLSTPYIRENTGRGLVAITTGRYQIRNVLFNFENSGFFQVEVTPTNRAKSTSIMNGYVIGTASSIVGQPAIASGTLRVPVQAQNTEFVLDIKSSSHLPMYIAGAEVEGYYHNRANRI
Physico‐chemical
properties
protein length:836 AA
molecular weight: 91021,64720 Da
isoelectric point:5,17982
aromaticity:0,10167
hydropathy:-0,31651

Domains

Domains [InterPro]
IPR058003
TTP
3–836
IPR058003
AXH68348.1
1 836
Architecture
TTP
TTP 3-836
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXH68348.1
1 836
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,9046
Central domain 134 332 200 0,6659
C-terminal 333 836 503 0,3757
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-332
C-terminal
333-836

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC021P
[NCBI] 		2282994 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXH68348.1 [NCBI]
Genbank nucleotide accession
MH579717 [NCBI]
CDS location
range 22625 -> 25135
strand +
CDS
ATGGGTGCAGTTGTTTCCCAGTCTATTCCTAACTTTTTGAATGGAATGTCTCAACAGACACCTACTCAAAGAGGATTAAATCAAGGAGAAGACCAAGTTAATTTACAAAATGGATTAGTAGATGGTTTATCTAAAAGACCACCTTTAGAATATGTAGCAACAGTAGATGCTTCAAACATATATTCTAATAAAACAAAATTTTGGAATATACAAAGAGATGACGCTAACCAATACATTGTAGCATTATACAATGGTGGTATTAAAGTATTTGATTTAGCAGGTAATTCAAAAACTGTTACTATACAAAGTGGTTCAAGTTATTTAACTTCAACTAATCCTAAAGAACATTTTAAATTAGTAAATATTGCTGACTATACTTTTATAGCAAATACACAAACTACTGTAACTGCTGACAGTACAACGTCTGCGGCTAAAGTAGAAGAATTTTTAATTGTTTGTAAATTAACAAACTATGGTAGGGAATATAAAGTAGCATTAAATCACCCTAACATGGCTTATGAACATGAAGTAGTGTTTCAATTACCTTCAGGTAATGATGCGTCTACTGATAGTAAATTTAGAGATACAAACAAAATTACAGATATATTATTAAATGGTACATCTAGTTCACACTGGGATAGTAACGCTAATGGTATTGGATTTAAAACTATTAGAACAGATACAGGTGCAACTTTATCTAGTTCACAAGGATTAGCAAACTATTCAGGTATATCATCTCATTTTACATTTGAAGCGTTTGATAGTGTTATTTATGGAAAACCTACAGGTACAGTTTCATCACCAAACACACTAGCTGACTATACAATAAGTTCATCAGATGGTTCTGGTAACACAGCTATGTATGCTATCAGAGATGAAATACAAGATTTTAGTAAACTACCTTTCTATGGAAAGAAAGATGTAATTATAAAAGTAACTGGTGAAGAAGGAGACACATTATCAGATTACTATGTTAAATTTACAGGTAAGTCTGGTGTATGGAATGAAACTATAGCACCTGCTACTTCTGTAGGTGTAACTAATTCTACAATGCCACACGCATTGATTAACAATAATAATGGTACATTTACTTTTAAAGAATTAGATTGGACAGATAGAGTATGTGGAGATAGCGAAACAAATGCTAACCCTACTTTTGTAGGAAAGAAAATAAATAACCTTACATTTTACAAAAACAGATTAGGTATTATGTCTGGTGAAAATTTAGTATTAACAGAAAATGCTTCTTTCTTTAATTTCTTTGCAACAACATCTACACAAGTTTTAGATACTGACCCTATTGATATAGCGGCTTCAGGTACACAGGTTAATACACTTAAAAACTCTGTAGGATTTAACGAAAGTTTATTGTTATTTTCTGATACAGCACAATACAAATTAGATAGCTCTGGTGAAAGCATATCACCTACAACAGCTATACTTAATGAAGTATCTTCATTTGAACATGATGATAAAGTAACACCAGTTTCAGCAGGTAAGTTTGCTTACTTTGCACAAGCTAGAACAAACAATACAGCAATAAGAGAATACTTTGCTGATGATGATACATTAACAAATGATGGTTTAGATATTAGTGTATCAGTACAAAATTTAATACCATCTAATTGTCATCAAATTGTAAGTAATACAACAGAAGACACATTAGTATTTCTTTCTGCTGATGATGCAGATAGTCAAACTGCACCATACACAGGGACAGCTTCAGCTACAAATGCTAGTACAATGATTATCTATAAGTATTTCTTTGATGGTGGTGAAAAAGTACAAAACGCTTGGTCTAAATGGACATTCACAGGTGTTAAAATTATAGGAGTAATGAGTAGAGAAAGTTATCTTTATGTATTAGCTTCTGAAGGTACTACTACAAAATTATTTAAAATAGATTTAAGAAATTTAAAAGATACTACTATAGGTCATGGAGTTTATCTTGACCTTAAAACATCTGTTACAGGAAGTTATAGTAGTACAACAGACAAAACTACGTTTACATCACCTTATGGTGCAAAAACTGGATTAATAGCTGTAGATAGAACTGATGGAAATAATTATACAGCTACAAATACAAGTGGTTCTACTTATACAATAGATGGAAACCACACTTCGTTATACATTGGTGTTCCTTACGAAAGTAAGTACAGATTGTCTACTCCATATATTAGAGAAAATACTGGTAGAGGATTAGTAGCTATTACTACAGGTAGATACCAAATTAGAAATGTATTATTTAATTTTGAAAACAGTGGGTTCTTTCAGGTAGAAGTAACTCCCACTAACAGAGCTAAATCAACTTCAATAATGAATGGATATGTTATTGGTACAGCTTCATCTATTGTTGGACAACCTGCTATAGCTTCAGGAACATTAAGAGTTCCAGTACAAGCACAAAACACAGAATTTGTATTAGATATTAAATCATCTTCTCATTTACCTATGTATATCGCAGGTGCAGAAGTTGAAGGCTATTATCATAACAGAGCAAATAGGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
16cdf4f14bf9ced5956037e05bd5b6469333315245e9978eeb6294c071d1ceac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pelagiphages in the Podoviridae family integrate into host genomes Zhao,Y., Qin,F., Zhang,R., Giovannoni,S.J., Zhang,Z., Sun,J., Du,S. and Rensing,C. 2019 30474915 GenBank