Protein

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Genbank accession
YP_009292503.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MPLYTQSIKNLKGGISQQPDILRFSDQGETQINGWSSESDGLQKRPPTVWKKRLTALNWVIPDRAKFHLINRDENEQYYIVFTGRDIMVFDLEGNQYAVTGNMSYVNTDTPRDDIRVITVADYTFIVNRKRVVKEGTEVSHPGYDMKHRALINLRGGQYGRTLTVSINGGTKVEHKLPAGNNAEEDPPKVDAQYIGEQLRTLLVAAYPNYTFNLGSGYLEIVAPAGQSITSVETTDGYANQLITAVLDTVQTISKLPLAAPEGYIIRIQGETNSSADEYYVRYDTQRKTWRETVEPGVTTGLDPTTMPHALVRQANGNFTFQTLDWSKRGAGNDDTNPMPSFVDNTINDVFFYRNRLGFLSGENVVMSRSASYFAFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFAEQLLLWSDEVQFVMSSSGVLTSKSIQLDVGSEFAVSDNARPFAIGRSVFFAAPRGSFTSINRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGSSTENFITVSTSGAPNKLFIYKFLFKDGVQLQASWSHWELETGDQVMASACIGSAMYLVRKHGYGVDLEKLEFIKETTDLAGEPYRYHMDGKATMVIPPNAFNANTHTTSFDVGAAYGQVFPPAGRYIMADTEGRFVVLPDTVWSSTRWVTVRGNWAGKTIFLGRIYKFTYAFSRFLIKHEDQNGTQTEDSGRLQLRRAWVNYQNTGALTMKVSNQHREFLNTLNGYKLGLQDVGTVNIGDGQFRFPMNGDALHTRLILESYYPTPLSIVGCGWEASYARKAQSI
Physico‐chemical
properties
protein length:789 AA
molecular weight: 88028,79940 Da
isoelectric point:5,85728
aromaticity:0,11280
hydropathy:-0,31660

Domains

Domains [InterPro]
IPR058003
TTP
1–789
IPR058003
YP_009292503.1
1 789
Architecture
TTP
TTP 1-789
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009292503.1
1 789
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9555
Central domain 140 346 208 0,1571
C-terminal 347 789 442 0,2375
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-346
C-terminal
347-789

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage SH3
[NCBI] 		1805466 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009292503.1 [NCBI]
Genbank nucleotide accession
NC_031123 [NCBI]
CDS location
range 23503 -> 25872
strand +
CDS
ATGCCACTTTATACACAAAGCATTAAGAACCTTAAGGGTGGCATTAGCCAACAGCCTGACATCCTTCGGTTCTCTGACCAAGGGGAGACCCAGATTAACGGATGGTCCTCTGAAAGTGATGGCCTCCAGAAGCGTCCACCTACAGTCTGGAAGAAGAGACTCACCGCTCTGAACTGGGTTATCCCTGACCGGGCAAAATTCCACCTGATTAACCGTGACGAGAATGAGCAGTATTACATCGTGTTCACTGGTCGTGACATTATGGTGTTCGACCTTGAGGGGAACCAGTACGCTGTGACTGGGAACATGAGCTACGTTAACACTGATACACCTCGTGATGACATCCGGGTTATTACAGTGGCTGACTACACGTTCATCGTCAACCGTAAGCGAGTCGTTAAGGAAGGTACTGAGGTCTCACATCCGGGATACGACATGAAGCACCGAGCGTTGATTAACCTTCGCGGTGGTCAGTATGGTCGAACGCTGACGGTATCAATCAATGGTGGGACCAAGGTAGAGCACAAGCTCCCGGCTGGTAACAATGCTGAAGAGGACCCACCTAAGGTCGATGCTCAATACATCGGCGAGCAACTGAGGACACTTCTGGTCGCTGCCTATCCGAACTATACGTTCAACCTTGGGTCAGGATACCTTGAGATTGTTGCGCCTGCTGGACAATCCATCACCTCCGTAGAGACGACTGACGGCTACGCTAACCAGTTAATCACTGCAGTCCTTGATACGGTACAGACTATCAGTAAGCTGCCACTGGCGGCTCCTGAGGGTTATATCATCCGTATCCAAGGTGAGACCAACAGTAGCGCTGATGAATACTACGTTCGGTATGACACCCAGCGTAAGACTTGGCGTGAGACGGTTGAGCCGGGAGTGACTACAGGTCTGGACCCTACGACCATGCCTCATGCTCTGGTTCGTCAGGCTAACGGTAACTTTACGTTTCAGACTCTGGACTGGTCTAAACGCGGTGCTGGTAATGATGATACTAACCCGATGCCGTCCTTCGTGGATAATACCATCAACGATGTGTTCTTCTACCGTAACCGTCTTGGCTTCCTGTCAGGAGAGAACGTTGTGATGTCTCGTTCAGCCAGCTACTTTGCGTTCTTCCCTAAGAGCGTGGCGACTCTTAGTGATGATGACCCTATTGACGTAGCGGTAAGTCACCCTCGAATCTCCATCCTGAAGTATGCCGTTCCGTTCGCTGAACAGTTACTCCTTTGGTCTGACGAGGTTCAGTTCGTGATGTCAAGCTCTGGAGTCCTTACCTCCAAGTCCATCCAACTTGATGTTGGCTCTGAGTTCGCTGTGAGTGATAATGCTCGACCGTTCGCTATTGGACGTTCAGTCTTCTTCGCTGCTCCTCGTGGCTCATTCACTAGCATTAACCGTTACTTTGCGGTAGCTGACGTCTCAGACGTTAAGGACGCCGACGACACCACTGGTCACGTTCTGTCTTACATCCCCAACGGAGTGTTTGACATCCAAGGGTCCTCTACCGAGAACTTCATCACGGTGTCCACCTCAGGTGCTCCGAACAAGCTGTTCATCTACAAGTTCCTGTTCAAAGATGGAGTACAGCTACAAGCCTCTTGGTCACACTGGGAGCTGGAGACTGGGGATCAGGTTATGGCGTCTGCCTGTATTGGCTCCGCGATGTACCTCGTCCGTAAGCATGGCTATGGTGTGGACTTAGAGAAGCTGGAGTTCATCAAGGAGACCACTGACCTAGCTGGTGAGCCGTATCGCTACCACATGGACGGCAAGGCCACGATGGTAATTCCACCTAATGCGTTCAACGCCAACACCCACACTACGTCCTTTGACGTTGGGGCAGCTTATGGTCAGGTGTTCCCGCCAGCAGGTCGCTACATCATGGCTGACACTGAGGGACGATTCGTGGTTCTCCCGGATACCGTATGGTCCAGCACTCGCTGGGTGACTGTACGTGGTAACTGGGCAGGCAAGACTATCTTCCTTGGTCGCATCTACAAGTTCACCTATGCGTTCTCACGGTTCCTCATTAAGCATGAAGACCAGAATGGGACGCAGACGGAGGACAGCGGTCGGTTGCAGTTACGTCGAGCTTGGGTAAACTACCAGAACACTGGGGCATTGACTATGAAGGTGTCTAATCAGCACCGTGAGTTCCTGAACACCCTGAATGGCTATAAGCTGGGACTACAGGATGTCGGTACTGTGAATATTGGAGACGGTCAGTTCAGGTTCCCTATGAACGGTGACGCTTTACACACAAGGTTAATCCTTGAGTCCTACTATCCTACCCCACTGTCAATCGTTGGATGTGGATGGGAGGCGTCTTACGCTCGTAAGGCTCAGTCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f56150858509b212c48ea3165b24b35f289c706f96dc2d866cccb44c9b11a636
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9013
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of five Podoviridae phages infecting Citrobacter freundii Hamdi,S., Rousseau,G.M., Labrie,S.J., Saied Kourda,R., Tremblay,D.M., Moineau,S. and Ben Slama,K. — — GenBank