Protein

View in Explore
Genbank accession
YP_004322457.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSIPYSTSIAQVLDKHLRIRHNGTWEYVEDVRINNSGTWEDVKEVYIRHSGSWQLVHEGEHFLFNHTLNGNSQSEFSLASWISGQGYSGNKIKGALTVNNLQQRVNLGSWSSDSRVYLRINNNDRISGKGGNGGQRGQNAASNGQNGQRALYTRVGFHLDNGGIIAGGGGGGAGGRNGQVTQQVTETNNCMKGNQCQNTYNVTNNTNGGGGGGGAGYPGGSNGGNGAQNGQSNGGGQGGSSGAGSARNGGNGGGLGQNGSNAENNQGGTRGTAGNAIDGWSYRISGEGSGNGDRRGNSVN
Physico‐chemical
properties
protein length:300 AA
molecular weight: 30878,49130 Da
isoelectric point:9,32459
aromaticity:0,06333
hydropathy:-0,88400

Domains

Domains [InterPro]
DC_1762
ATT
14–193
DC_1762
IPR007932
RBD
66–297
IPR007932
YP_004322457.1
1 300
Architecture
ATT
RBD
ATT 14-193 | RBD 194-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-HM1
[NCBI] 		445700 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322457.1 [NCBI]
Genbank nucleotide accession
NC_015280.1 [NCBI]
CDS location
range 26834 -> 27736
strand +
CDS
ATGTCAATACCCTATAGTACTTCAATTGCCCAAGTTCTTGATAAGCATTTGCGTATCAGACACAATGGCACATGGGAATACGTTGAAGATGTAAGAATAAACAACAGTGGCACATGGGAGGATGTTAAAGAAGTATACATTCGTCATAGTGGATCATGGCAACTTGTTCATGAGGGTGAACACTTCTTGTTCAACCATACATTAAATGGTAACTCACAAAGTGAATTTAGTTTAGCAAGTTGGATATCTGGTCAAGGTTACAGTGGTAACAAGATAAAAGGTGCATTGACAGTTAATAATTTACAACAACGAGTGAACTTAGGATCATGGTCTAGTGACTCTAGAGTATATCTTAGGATCAATAATAATGATAGAATATCTGGTAAAGGTGGTAATGGTGGTCAACGTGGTCAAAATGCAGCATCTAATGGTCAAAATGGACAACGTGCATTATATACAAGAGTTGGTTTTCATTTAGATAATGGTGGCATCATCGCAGGAGGCGGTGGTGGCGGTGCAGGAGGTCGTAATGGACAAGTTACACAACAGGTAACAGAAACTAATAACTGTATGAAAGGAAATCAGTGCCAGAATACATATAATGTAACCAACAACACTAACGGTGGTGGAGGTGGCGGTGGAGCTGGTTATCCTGGCGGTTCTAACGGTGGTAATGGAGCACAAAACGGTCAGTCAAATGGCGGTGGACAAGGTGGTTCATCAGGTGCAGGATCTGCTAGAAACGGTGGTAACGGTGGAGGTCTTGGTCAAAACGGTAGTAATGCTGAAAATAACCAAGGTGGAACACGAGGAACCGCAGGAAATGCCATCGACGGATGGAGTTATAGAATATCAGGAGAGGGTTCTGGTAATGGAGACCGTAGAGGTAACTCAGTAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2c9af9d159cd79fb711cf2edd18da68bce4b1321e170025d54645753440c12d1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8435
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage M4-247 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank