Protein

View in Explore
Genbank accession
XAV38168.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRNGSRGVLFGLDSDNKLKWGGYSLGAVAFEIADSNNLMSLWSSHAAAPNWNGQTIWRSGNFNPDTKATLAARNTTSSPTIFSYGASGIASTGQVGALVVENNSVTNTAAAITFHSPQKYQVNFGLDADNVVKIGGGTMGGVAYPIIHSGNYNNYINQALVQVGLGGVGSYAILAVYDTSAPASSVGPGTILDSSKLFYSSCDSTYRSSARPTGTWRCMGYVYNRDSTNGDSASLFQRVT
Physico‐chemical
properties
protein length:240 AA
molecular weight: 25244,61360 Da
isoelectric point:8,50236
aromaticity:0,10417
hydropathy:-0,15875

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAV38168.1
1 240
Domain Start End Length (AA) Confidence
N-terminal 1 15 15 0,0018
Central domain 16 214 200 0,1004
C-terminal 215 240 25 0,9991
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-15
Central
16-214
C-terminal
215-240

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_RyC23_M4LORT
[NCBI] 		3148939 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAV38168.1 [NCBI]
Genbank nucleotide accession
PP781973 [NCBI]
CDS location
range 64188 -> 64910
strand +
CDS
GTGAGAAATGGATCGCGTGGAGTGCTATTCGGCTTGGATTCTGACAACAAGCTGAAGTGGGGCGGATATTCCCTAGGGGCCGTCGCGTTCGAGATTGCCGACTCCAACAACCTCATGAGCCTGTGGTCATCCCACGCTGCCGCGCCGAACTGGAACGGGCAGACCATCTGGAGGTCGGGAAACTTCAACCCAGACACCAAGGCGACTTTGGCAGCTCGCAATACGACGTCATCCCCTACAATATTCAGTTATGGGGCGTCCGGAATCGCATCAACCGGACAGGTCGGTGCGTTGGTTGTGGAAAACAACAGCGTCACCAATACCGCAGCCGCCATCACGTTCCATTCGCCGCAGAAATATCAGGTCAACTTCGGCCTGGATGCGGACAACGTGGTAAAGATCGGTGGCGGCACAATGGGCGGCGTAGCATATCCCATCATCCACTCCGGCAACTACAACAACTACATCAACCAGGCGCTGGTTCAGGTGGGTCTTGGCGGAGTCGGTTCCTACGCGATCCTTGCCGTGTACGATACTTCCGCACCGGCATCGTCCGTTGGACCTGGTACCATCTTGGACAGTTCCAAGCTGTTCTATTCGTCCTGCGATTCGACCTATCGCAGCAGCGCCCGTCCGACGGGCACCTGGCGCTGCATGGGGTATGTGTATAACCGAGACTCCACCAACGGCGACTCGGCATCCCTATTCCAGCGGGTAACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b61ca870f7aa1af8ce46df24cbe2df6bc47f8ee0d8907c9fef09838c0f543f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6729
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Description of a lytic phage, vB_PaeM_RyC23_M4LORT, with activity against Pseudomonas aeruginosa high-risk clones Gonzalez de Aledo,M., Hernandez-Garcia,M., Maruri,A., Caballero,J.D. and Canton,R. 2022-09-26 — GenBank