Protein

View in Explore
Genbank accession
UJH95575.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MEDFDYTPLSSMRFQAQLGSEVKRMYKEGESVVRLSLARVTKVNYKYNTVEVMTTLHKNSTSKNPSDNGRYSARLPVVFGGRTPQGKVYGSNTIVTIGSLVLIGFLEGNKDHPIVLNIYGDADNQSMLTRTTMTGGDESDEAVQRELWQLFTLYPSMTYQNIDGRGNKEVTFSGKSFMYITDTDPGNEYVQDGAFDYADLPSSRYANGELIEPISPNSPTVLYVHQGIYDNHRVTFFLKSDGTLRVGSRHRNGKGITYQEMKTDGSFSIVQKQDTTNPEEISKKFSKFEISENGDVTIQSPDHKLTITKDGVLIDGKPIGSGGGGEDLEIIKELQEKVEGVTTQITMVNGKLDFKIDKVEIEIDLDTLRQEQQKVLDAIRAQLDSLSSALKAMKDYTLPAFEDGTVTADEKKKVNELLTAVGREKAKVDEKYSQTISDPFLPATHKDLLTVSKGVLDSRHQALLNTIEIVMLDGVITPDERIAVAQAFDGYEQAIAALDVSFKQAMDAILEARIKEAQENAMKYRDTEMRKIGSQITQLADSITAKVSSEQLSKQIEEVRSEMATKEEQQEIKDTAEKAQKDAEEALKKVPHRIMVGSTNGLIFRNGEIDSVLYAKVYKGDDEVTSTIPTANFFWSRISDDESGDLQWNKDHVGIGSSFKISKDDVPQRATFECDVEVPVS
Physico‐chemical
properties
protein length:681 AA
molecular weight: 75817,19910 Da
isoelectric point:4,97935
aromaticity:0,07048
hydropathy:-0,51718

Domains

Domains [InterPro]
DC_0209
STR
11–680
DC_0209
SSF69255
ATT
65–117
SSF69255 Coil Coil Coil
UJH95575.1
1 681
Architecture
STR
ATT
STR
STR 11-64 | ATT 65-117 | STR 118-680 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJH95575.1
1 681
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,6587
Central domain 143 612 471 0,1749
C-terminal 613 681 68 0,0947
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-612
C-terminal
613-681

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage vB_BtM_BMBsp2
[NCBI] 		2163421 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bacillus thuringiensis
[NCBI] 		1428 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJH95575.1 [NCBI]
Genbank nucleotide accession
OL964058 [NCBI]
CDS location
range 26388 -> 28433
strand +
CDS
GTGGAAGATTTTGACTACACACCACTGTCCTCTATGAGGTTTCAGGCTCAACTAGGATCAGAAGTTAAACGTATGTATAAGGAGGGAGAGAGTGTTGTTAGGCTCTCCCTTGCTAGGGTTACAAAGGTTAACTACAAGTACAATACAGTGGAAGTTATGACAACACTACATAAAAACTCAACATCAAAGAATCCGAGTGACAACGGGAGATACTCTGCTAGACTACCAGTTGTATTCGGTGGACGTACTCCGCAAGGTAAAGTATACGGTTCTAACACAATCGTTACAATCGGATCATTAGTATTAATCGGATTCCTAGAAGGTAATAAAGACCACCCTATTGTTTTAAACATCTACGGTGATGCGGATAACCAATCAATGTTAACACGTACAACGATGACAGGTGGAGACGAATCAGACGAAGCAGTCCAACGTGAGCTATGGCAATTATTCACTCTATACCCTTCTATGACTTATCAGAATATTGATGGTCGAGGAAATAAGGAAGTAACTTTCTCAGGTAAGTCATTCATGTATATTACAGACACTGACCCTGGGAACGAATACGTACAGGATGGAGCTTTCGACTACGCAGACTTGCCGAGTTCTCGTTATGCAAATGGGGAACTAATCGAACCTATATCTCCAAACTCTCCTACAGTGTTATACGTCCACCAAGGTATCTATGATAATCATAGAGTTACATTCTTCCTGAAATCGGACGGAACGTTACGGGTAGGTAGCAGACATAGAAATGGTAAAGGGATTACATACCAAGAAATGAAAACGGACGGATCGTTCTCTATCGTGCAAAAACAGGACACTACGAACCCTGAAGAGATTTCTAAAAAGTTCTCTAAGTTTGAAATTTCTGAAAATGGTGATGTTACAATCCAGTCCCCTGACCACAAACTAACTATCACAAAAGATGGTGTTCTGATTGACGGTAAACCAATCGGTTCAGGTGGTGGAGGAGAAGACCTTGAGATTATCAAGGAACTGCAAGAAAAGGTAGAAGGTGTAACCACACAGATAACAATGGTTAACGGTAAGCTAGATTTTAAGATTGACAAAGTTGAAATAGAGATAGACTTGGATACGCTTCGACAGGAGCAACAAAAAGTATTAGATGCTATCCGAGCACAACTGGACAGTTTATCTAGCGCACTGAAAGCTATGAAAGATTACACGTTACCTGCATTTGAGGATGGTACGGTTACGGCAGATGAAAAGAAGAAAGTTAATGAGCTTCTAACTGCCGTAGGAAGAGAGAAAGCAAAGGTAGACGAGAAGTATAGCCAAACTATCTCCGATCCATTCTTACCAGCCACACACAAAGATTTATTAACAGTATCGAAGGGTGTACTAGACAGTAGACATCAAGCGTTACTGAACACAATAGAAATCGTTATGTTAGACGGAGTTATAACTCCTGACGAACGTATAGCAGTAGCACAGGCATTCGATGGGTACGAGCAAGCTATTGCGGCTTTAGACGTATCCTTTAAACAGGCAATGGACGCAATCCTTGAAGCCCGTATTAAAGAAGCACAAGAGAATGCTATGAAATACAGAGATACAGAGATGCGTAAAATCGGTTCACAGATTACGCAACTAGCAGACTCTATCACGGCAAAAGTTAGTTCAGAACAACTATCGAAACAAATAGAAGAGGTTCGTTCTGAAATGGCTACAAAAGAAGAACAACAAGAAATCAAGGACACTGCCGAGAAAGCACAAAAGGATGCAGAGGAAGCCTTGAAGAAGGTACCTCATCGTATCATGGTCGGTAGCACAAATGGTCTTATCTTCAGGAACGGAGAAATAGATAGTGTCCTGTACGCTAAGGTGTACAAAGGAGATGACGAGGTTACATCGACTATACCTACGGCTAACTTCTTTTGGTCTCGTATTTCGGACGATGAGAGTGGAGACCTACAGTGGAATAAAGACCACGTAGGTATAGGAAGCTCGTTTAAGATTTCGAAAGATGACGTACCACAGAGAGCAACGTTTGAATGTGATGTAGAGGTACCTGTTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f7a8c61c31f29602224ce88d8bf9d4a2100991ede443e551080154510c4ae70a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6960
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel subgroup of metallo-beta-lactamases, B5, found in Bacillus phages isolated from China soil Wang,K., Dong,Z., Zheng,J., Peng,D. and Sun,M. 2020-05-07 — GenBank