Protein

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Genbank accession
AMR59628.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,68
Protein sequence
MPLYTQSIKNLKGGISQQPDILRFSDQGEQQINGWSSESDGLQKRPPTVWKKRLSAVNWVIPNNAKFHLINRDENEQYYIVFTGKEIMVFDLEGNQYAVSGVTDYVNTSKPRDDIRVITVADYTFVVNRRAVVAQGTTKANPTYNMKNRALINLRGGQYGRLLKVGINGGTKVEHQLPPGNDAENDPPKVDAQAIGKALVDLLVVAYPNYTFTLGSGYIEIKAPSGTNINSVETEDGYANQLINAVLDTVQTISKLPLAAPEGYIIRIQGETNSSADEYFVKYDSAKKTWRETVEPGTITGFDASTMPHALVRQADGNFTFQTLDWTERGAGNDETNPMPSFVNSTINDVFFYRNRLGFLSGENVIMSRSAGYFAFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFAEQLLLWSDEVQFVMTSSGVLTAKSIQLDVGSEFAVSDNARPFAIGRSVFFAAPRGSFTSINRYFAVADVTDVKDADDTTGHVLSYIPNGVFDIQGSSTENFITVSTEGAPNKLFIYKFLFKDGVQLQASWSHWELEQGEQIMASACIGSAMYIVRKHGYGVDLEKLEFIKETVDIAGEPYRLHLDGKTTMVIPTNAFNPNTYTSSFDVGAAYGGVFPPAGKYVMVDSSGRFVHLPDTVWSSTRWVTVKGDWSGKTVFLGRVYKFTYAFSRFLIKYEDQNGTVTEDSGRLQLRRAWVNYQRTGALVMRVVNQHREFLNTLNGYKLGLQDIGQVNIGDGQFRFPMNGDALHTRLILESDYPTPVSIVGCGWEASYARKAKAI
Physico‐chemical
properties
protein length:789 AA
molecular weight: 87593,56810 Da
isoelectric point:5,79652
aromaticity:0,11280
hydropathy:-0,25729

Domains

Domains [InterPro]
IPR058003
TTP
1–789
IPR058003
AMR59628.1
1 789
Architecture
TTP
TTP 1-789
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMR59628.1
1 789
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9882
Central domain 141 346 207 0,1270
C-terminal 347 789 442 0,2213
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-346
C-terminal
347-789

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage SH5
[NCBI] 		1805468 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMR59628.1 [NCBI]
Genbank nucleotide accession
KU687351 [NCBI]
CDS location
range 23645 -> 26014
strand +
CDS
ATGCCACTTTACACGCAATCAATCAAGAACCTGAAGGGTGGCATTAGCCAACAGCCGGACATCCTGAGGTTCTCTGACCAAGGTGAACAGCAGATTAACGGCTGGTCATCCGAGAGTGACGGGCTTCAGAAGCGACCGCCGACCGTCTGGAAGAAAAGACTGTCAGCCGTGAACTGGGTCATCCCGAACAACGCTAAGTTCCACCTGATTAACAGGGACGAGAACGAGCAGTATTACATAGTCTTCACCGGAAAGGAAATCATGGTCTTTGACCTTGAGGGGAACCAGTACGCTGTCTCAGGAGTCACCGACTACGTGAACACTTCCAAGCCACGTGACGACATCCGGGTAATCACGGTAGCTGACTACACTTTCGTAGTGAATCGTCGAGCTGTGGTGGCTCAGGGGACAACTAAGGCCAACCCTACTTACAACATGAAGAACCGCGCCTTGATTAACCTTCGTGGTGGTCAGTATGGTCGATTGCTGAAGGTAGGAATTAATGGAGGGACAAAGGTTGAACACCAGCTTCCTCCGGGTAACGATGCTGAGAACGACCCACCTAAAGTCGACGCTCAGGCTATCGGCAAGGCGTTAGTGGACCTGCTTGTCGTGGCCTATCCGAACTACACGTTCACCCTTGGGTCTGGCTACATCGAGATTAAAGCTCCATCAGGAACCAACATCAACTCGGTGGAGACTGAGGATGGTTATGCCAACCAGCTCATCAATGCGGTACTGGATACTGTGCAGACTATCAGTAAGCTACCTCTGGCAGCACCTGAAGGCTACATCATCCGTATCCAAGGTGAGACCAACAGCTCAGCCGATGAGTATTTCGTGAAGTATGACTCCGCGAAGAAGACTTGGCGAGAGACCGTGGAGCCGGGGACCATAACTGGTTTCGATGCGTCGACCATGCCACATGCTCTGGTCAGACAGGCAGATGGGAACTTTACGTTCCAGACCCTAGACTGGACTGAGCGTGGAGCTGGTAACGATGAAACCAACCCGATGCCGAGCTTCGTGAACTCTACGATTAACGATGTGTTCTTCTATCGTAACCGACTAGGGTTCCTCTCCGGTGAGAACGTCATTATGTCCCGGTCCGCTGGATACTTTGCGTTCTTCCCTAAGAGCGTGGCGACCCTCAGTGATGATGACCCGATTGACGTGGCTGTGAGTCACCCTCGAATCTCCATCCTGAAGTATGCTGTGCCATTCGCAGAACAGCTACTACTGTGGTCTGACGAGGTGCAGTTCGTGATGACCAGCTCCGGGGTACTGACCGCCAAGTCCATCCAACTAGATGTAGGCTCTGAGTTCGCTGTTAGTGATAATGCGCGACCGTTCGCCATTGGACGTTCAGTCTTCTTCGCTGCCCCTCGCGGCTCGTTCACCAGCATTAACCGTTACTTTGCGGTGGCTGACGTTACGGACGTGAAGGACGCAGACGATACGACCGGGCATGTGTTGTCCTACATTCCTAATGGAGTATTCGACATCCAAGGGTCCTCTACCGAGAACTTCATCACCGTGTCGACTGAAGGCGCTCCGAACAAGCTGTTCATCTACAAGTTCCTCTTCAAGGATGGCGTACAGCTTCAAGCCTCGTGGTCACACTGGGAGCTGGAGCAGGGCGAGCAGATTATGGCCTCAGCCTGTATCGGGTCCGCTATGTACATCGTGCGTAAGCATGGCTATGGCGTGGACTTGGAGAAGCTGGAGTTCATCAAGGAGACTGTGGACATCGCTGGCGAACCCTACCGCCTGCATCTTGATGGCAAAACCACTATGGTAATCCCGACTAACGCATTCAACCCTAACACATACACCTCGTCCTTCGACGTTGGCGCTGCTTATGGTGGAGTCTTTCCGCCAGCAGGGAAGTACGTCATGGTAGACTCCAGTGGGCGATTCGTCCACCTGCCGGATACCGTATGGTCCAGCACTCGGTGGGTGACTGTGAAGGGAGACTGGTCAGGCAAGACCGTGTTCCTTGGTCGCGTCTATAAGTTCACCTACGCCTTCTCTCGGTTCCTCATTAAGTATGAAGACCAGAACGGGACGGTGACGGAAGACTCCGGTCGACTTCAGCTTCGCCGCGCTTGGGTGAACTATCAGCGAACTGGCGCTCTGGTGATGCGGGTCGTCAACCAGCACCGTGAGTTCCTGAACACGCTGAACGGCTACAAGCTGGGCCTACAGGACATCGGTCAGGTAAACATTGGTGACGGTCAGTTCAGGTTCCCAATGAACGGAGATGCTCTGCACACTCGGTTAATCCTTGAGTCAGACTATCCGACCCCAGTGTCCATCGTTGGTTGTGGCTGGGAGGCTTCATATGCCCGTAAAGCCAAAGCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e5f0cb8911a96c9e435285d89aff72b7aa73b00bb4d1f6cdb943ae7cde5ee7f3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of five Podoviridae phages infecting Citrobacter freundii Hamdi,S., Rousseau,G.M., Labrie,S.J., Saied Kourda,R., Tremblay,D.M., Moineau,S. and Ben Slama,K. — — GenBank