Protein

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Genbank accession
YP_007674157.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MGLKSTFSTNEGKAEACAVDKYVNTAYDNMVIISDNIEALLEISDNLEYLTVYLGSYTTDPTERPDGTPLQDGDYYFNTLINALVYYDLAETNWFTVDPQELLDARDAAQAAQAAAETAEANALVSENNAAASELNASNSEAAALASEQAAAISEANASASETAAALSETNAAASEANALASENAAKASETAAALSETNAATSETNAANSASAALTSETNAAASETSAANSAVVAGGYAADAEAAFDNFNDLYLGAKTADPTLDNDGNPLQVGATYWNSVTNDLRYWNGVSWDIPEETAIQAANTAVAARDDAQISETNAAASAAAASTSETNAATSEANALASEQAAALSETNAATSASNAATSEFNAAQSASDAAGSAASAAQSEANIDVAVTEAQNDIIGGSIFKGSNGEHVQNGDTVPSGTTHLRVEIGGEPTIVAMYPKSSGDVSSLSDDGATIGGTQVTFFKEIEKSVVYASNWIGLTTTNVTEKLIEMHKYAYENRLQVIYDGNFSLEVDLSKTSTSQGGTPIFVDSDTDFGGVTFSFKNASSVGGGDDDEFMRFDAQDLIDISGFVNISEFGYGSTYAPSLAAYEDAYIFINTTKDLVKRNPSDTEFRTYAVNNKVHRFGQLQYPVNYDCSDATGFKSAVLRPSKNAITIKGGIIDCTGVNNARLFVTARNNTTLDGIKCVRSDSPLNTSNNIFYFDRCCDITYKNMKPLGQNSSGTGTYGISGDGAVNLTLDNVSAVVGWGAMGTNYVNGLNVIGGYLSRVDVHFMGENIEVTRTQLKGLNIQVGIGGGYLKVKDVSVVLGKDPQRNIVDANRLIYIRPDYGSTWKGDIDIDGVSIRVAKEYDVVDTAFDMVQNVFSDNDTLVSPEIHYPFGMSLSAKNVSILVYPVGGFMGLELFNCGTVGPQQSRMMLPLKIEMESFKSITRNSEVPIVLSRTFSFIFDNDPQLHWAHTQSKSNYSGSDVEIFISDIDAIGTRPNGYISRDQQRNLLCFLSRSIDYDAHPNLPRFSVKGEKLSNLGFTWENQGDVDIDNSHIIGVWNNSNTTAIIKVTGSRCEVMKNPNGDNAYRRSFGICFENCIFIPSVGSLNDTLRTDNIVSASKCLVHKDVNLLTGAGMRTRQEMFDGFVDDPNGLVSLT
Physico‐chemical
properties
protein length:1145 AA
molecular weight: 121980,64540 Da
isoelectric point:4,36463
aromaticity:0,08210
hydropathy:-0,22035

Domains

Domains [InterPro]
DC_1362
ATT
4–180
DC_1362 DC_2319
Coil
Unmapped
102–122
Coil DC_2093
YP_007674157.1
1 1145
Architecture
ATT
STR
STR
ATT 4-180 | STR 181-316 | STR 325-499 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674157.1
1 1145
Domain Start End Length (AA) Confidence
N-terminal 1 488 488 0,9970
Central domain 489 1133 646 0,9703
C-terminal 1134 1145 11 0,6869
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-488
Central
489-1133
C-terminal
1134-1145

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBP47
[NCBI] 		754073 Uroviricota > Caudoviricetes > Schitoviridae > Stoningtonvirus > Stoningtonvirus VBP47
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674157.1 [NCBI]
Genbank nucleotide accession
NC_020848 [NCBI]
CDS location
range 53235 -> 56672
strand -
CDS
ATGGGTTTAAAATCAACCTTTAGTACAAATGAAGGTAAGGCAGAAGCATGTGCGGTGGACAAATATGTCAACACTGCATATGACAACATGGTTATCATCTCTGACAATATTGAAGCACTGTTAGAGATCTCAGATAATCTTGAGTACCTTACTGTTTATTTAGGTTCGTACACTACGGACCCTACAGAGCGTCCTGATGGAACTCCATTACAGGATGGTGACTACTACTTTAACACACTGATCAATGCATTGGTGTACTACGACCTTGCTGAAACAAACTGGTTTACAGTAGATCCTCAGGAACTTCTCGATGCTCGTGATGCAGCTCAGGCTGCTCAGGCAGCGGCAGAGACGGCTGAAGCTAATGCTTTAGTATCTGAGAACAATGCTGCGGCATCTGAACTTAATGCTTCCAATAGTGAGGCAGCTGCACTTGCATCTGAACAAGCTGCTGCGATCTCTGAAGCTAACGCTTCAGCTAGTGAGACTGCTGCTGCACTAAGTGAAACGAATGCTGCTGCAAGTGAAGCAAATGCACTAGCCTCTGAGAACGCCGCTAAGGCCTCTGAGACAGCTGCAGCTCTGAGTGAGACCAATGCTGCCACTTCAGAGACAAACGCTGCTAACAGCGCTTCTGCGGCCCTCACAAGCGAGACTAATGCTGCTGCGTCAGAAACGTCTGCTGCTAACTCTGCTGTAGTTGCTGGAGGTTATGCTGCGGATGCCGAAGCTGCTTTTGATAACTTCAATGATTTGTACTTAGGTGCGAAGACGGCTGACCCTACTCTAGATAACGACGGTAACCCGTTACAGGTAGGTGCTACTTACTGGAACTCTGTCACTAACGATCTTCGTTACTGGAACGGCGTTTCATGGGATATCCCAGAAGAGACAGCAATCCAAGCGGCTAATACTGCGGTAGCAGCTCGTGATGATGCACAGATCTCAGAGACTAATGCGGCGGCTAGTGCTGCGGCTGCAAGTACTTCTGAAACTAACGCTGCTACTTCTGAGGCTAATGCTCTTGCTAGTGAACAGGCGGCAGCTCTTTCGGAGACGAACGCGGCTACTTCTGCATCTAATGCAGCAACCTCAGAATTCAACGCAGCTCAAAGCGCATCCGATGCAGCAGGCTCAGCAGCAAGTGCAGCGCAGTCAGAAGCAAATATTGATGTAGCTGTAACTGAAGCACAAAACGACATTATAGGCGGTTCGATATTTAAAGGGTCGAATGGTGAGCATGTACAGAACGGCGACACTGTCCCGTCGGGCACCACTCATCTTCGTGTTGAGATTGGTGGCGAGCCTACGATTGTGGCGATGTATCCTAAGTCCAGTGGCGATGTATCTTCATTATCAGATGATGGAGCCACTATTGGTGGTACTCAAGTTACATTCTTCAAGGAGATAGAGAAAAGCGTTGTTTACGCATCTAATTGGATTGGCTTGACGACAACAAACGTTACAGAAAAACTAATCGAGATGCATAAGTATGCCTACGAGAATAGATTGCAAGTAATATATGACGGGAATTTCTCACTGGAGGTTGACCTGTCAAAGACGTCTACATCTCAAGGTGGTACGCCTATTTTTGTGGACTCTGACACTGATTTTGGTGGTGTTACTTTTTCATTCAAAAATGCATCATCTGTTGGTGGTGGAGATGATGATGAGTTCATGCGGTTCGACGCCCAAGACCTGATTGATATTTCTGGATTTGTAAACATATCCGAGTTTGGTTATGGGTCTACGTATGCTCCATCATTGGCAGCGTATGAGGATGCGTATATCTTTATAAATACAACTAAAGACCTGGTAAAACGAAACCCTTCTGACACAGAATTTAGGACATACGCAGTTAACAACAAAGTCCATCGTTTCGGCCAGCTTCAATACCCCGTTAACTACGACTGCTCTGATGCTACTGGTTTCAAGTCCGCCGTACTTAGACCAAGCAAAAACGCCATAACAATCAAGGGAGGTATTATTGATTGTACTGGCGTTAACAACGCAAGGTTGTTCGTTACAGCAAGGAATAACACAACACTAGACGGAATTAAGTGCGTTAGGTCTGATTCTCCACTTAATACATCAAACAACATTTTTTACTTTGATAGATGTTGCGACATAACTTACAAGAACATGAAGCCACTAGGTCAAAATTCTAGTGGGACAGGCACTTATGGAATATCTGGTGATGGTGCGGTAAATCTAACTTTAGATAATGTTTCTGCTGTCGTCGGCTGGGGAGCCATGGGCACTAACTATGTTAACGGACTAAATGTCATTGGTGGTTATTTGAGTCGCGTGGATGTTCACTTTATGGGTGAAAATATAGAGGTAACACGAACTCAGCTTAAAGGCCTGAACATCCAAGTCGGAATTGGCGGTGGATACCTTAAAGTCAAGGATGTATCGGTTGTTCTTGGTAAAGACCCACAAAGAAATATAGTTGACGCTAACAGGCTTATATACATTCGCCCTGACTACGGAAGCACATGGAAAGGCGACATTGACATAGATGGTGTTAGTATACGTGTCGCCAAGGAATACGACGTTGTGGACACTGCTTTCGATATGGTTCAGAACGTATTCAGTGATAATGACACCCTCGTCAGTCCCGAAATTCATTACCCGTTTGGTATGTCGCTATCAGCTAAGAATGTGTCAATCCTCGTTTACCCTGTTGGTGGATTTATGGGTCTCGAATTATTTAACTGTGGAACGGTCGGGCCGCAGCAATCAAGAATGATGCTTCCACTAAAAATTGAGATGGAATCATTCAAATCAATAACCAGAAACTCAGAAGTTCCAATTGTCTTGAGTAGAACTTTTAGTTTTATATTCGACAATGACCCACAACTTCATTGGGCGCACACTCAATCAAAATCTAACTATAGCGGTTCTGATGTTGAGATTTTCATTTCTGATATAGACGCAATAGGAACAAGACCGAATGGATATATATCTAGAGACCAGCAAAGAAACCTTCTTTGTTTCTTGAGTAGAAGTATAGATTACGACGCACACCCGAACTTGCCTAGATTCTCCGTGAAAGGTGAAAAGCTCTCAAATCTAGGGTTTACATGGGAGAATCAAGGTGATGTTGACATAGACAATAGCCATATTATTGGAGTTTGGAACAACTCGAACACCACAGCCATAATCAAGGTTACTGGCAGTCGGTGCGAGGTCATGAAGAATCCAAACGGAGACAATGCGTACAGAAGGTCATTTGGTATATGCTTTGAGAATTGTATTTTCATCCCTTCTGTTGGGTCATTAAACGACACATTGCGTACTGACAATATTGTTTCTGCAAGTAAATGTCTGGTGCATAAAGATGTGAACCTGCTTACTGGCGCTGGAATGAGAACAAGACAGGAAATGTTCGATGGTTTTGTAGACGACCCAAATGGTTTGGTTTCACTAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3722fa57d9c3a8fc5947375524a83881b2acfdfa97df1298cf86b27b08d346f9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5807
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBP47 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank