Protein

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Genbank accession
WKC56050.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MILKLGDIDLNPNMHIPELDQSFGVSMSYRQTLSGGVRVFQGSVTAGRRLTLIATNDQGWVTKENRDKLLDLASRIGEPLTLDSGNDSYNVMLDHSEGSAVSLTPFIHRRIPLNGDYYTGTIKLITI
Physico‐chemical
properties
protein length:127 AA
molecular weight: 14034,78820 Da
isoelectric point:5,83830
aromaticity:0,06299
hydropathy:-0,19685

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CAU_VPP01
[NCBI] 		3061015 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKC56050.1 [NCBI]
Genbank nucleotide accession
OQ858564.1 [NCBI]
CDS location
range 28629 -> 29012
strand +
CDS
ATGATTTTAAAATTAGGCGACATTGATTTAAACCCTAATATGCACATCCCAGAGCTTGATCAAAGCTTTGGGGTGTCCATGAGTTATCGACAAACTCTATCGGGTGGTGTTCGGGTGTTTCAGGGTAGCGTCACGGCGGGGCGTCGCCTCACCCTGATAGCCACCAACGACCAAGGGTGGGTCACTAAAGAGAACCGCGACAAGTTACTAGACCTCGCTAGTCGTATAGGCGAGCCGTTAACACTTGACTCGGGCAATGATAGCTATAACGTTATGCTTGACCATTCCGAAGGGTCGGCGGTAAGCCTAACACCATTCATACACCGTAGAATCCCACTTAACGGCGATTACTACACGGGCACTATTAAACTAATTACTATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fa7ee121aa806dac1261981520a5a763219253e9f52bfe102fcc6334c68eadf
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6120
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and application of bacteriophage on Vibrio parahaemolyticus cocktail biofilm to inhibit seafood contamination Kim,B., Ha,S., Byun,K., Choi,M. and Ashrafudoulla,M. 2024-07 — GenBank