Protein

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Genbank accession
URY12693.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,98
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVGEIQISALPQASLPIDLSDIFHLKQGIEDRRCTLEQLLAPHASLRNNPHGVTKIHVDLGNVVNALQLVAANNLSDVVSVEEARQNLNILSSDEVNTLIQNHINDKNNPHNTNKIQVGLSNIQNWTYSNSYSEDADKYATAKAVNALYRAIQDSYPIGTIHLSVNPANPTTYLLCGGTWELVSKGRSLVGYDTDTRPVESVFGSATATLTQNNIPSHTHSVLLTGGGHSHNATVVISSFDYGIKNTSSFDYDSKATNDSGSHAHNVNGSVSSAGSHSHRIPLRGSDRGGVNAITASADAGIGNASYTDFDGVHTHTFNVNSSVGGNHSHSVYIGAHGHSVVIGSHGHSGTVTVQSSEHTHSGTTGAFGAGQAFNIEQPSYVVYVWKRTA
Physico‐chemical
properties
protein length:391 AA
molecular weight: 41513,91340 Da
isoelectric point:6,17217
aromaticity:0,06138
hydropathy:-0,31816

Domains

Domains [InterPro]
DC_1039
STR
1–391
DC_1039
IPR051934
Unmapped
110–359
IPR051934
IPR053827
ATT
156–270
IPR053827
URY12693.1
1 391
Architecture
STR
ATT
STR
STR 1-155 | ATT 156-270 | STR 271-391
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URY12693.1
1 391
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9838
Central domain 148 346 200 0,0321
C-terminal 347 391 44 0,9883
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-346
C-terminal
347-391

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh21
[NCBI] 		2950767 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY12693.1 [NCBI]
Genbank nucleotide accession
ON528731.1 [NCBI]
CDS location
range 68355 -> 69530
strand +
CDS
ATGGCAGTCGGTGAAATTCAAATTAGTGCATTACCTCAAGCCTCATTACCTATTGATTTAAGTGATATCTTTCACCTTAAGCAAGGTATTGAGGATAGGCGATGCACACTTGAGCAATTACTTGCTCCACACGCATCTTTGAGAAATAACCCACACGGTGTTACAAAGATTCACGTAGACCTTGGGAATGTTGTTAACGCACTCCAATTAGTGGCTGCTAATAACTTGTCAGATGTGGTCAGTGTTGAAGAGGCTAGACAGAATCTTAATATTCTATCAAGTGATGAAGTCAATACTCTTATCCAGAACCACATTAATGACAAGAATAATCCTCACAACACCAACAAGATTCAAGTAGGTTTGTCTAATATCCAAAACTGGACATATTCAAACTCTTATTCTGAAGATGCTGATAAGTATGCTACTGCAAAAGCTGTGAATGCTTTATATAGAGCTATTCAGGATAGCTATCCAATTGGTACTATTCATTTATCAGTTAACCCTGCGAACCCAACTACATATTTACTTTGTGGTGGTACTTGGGAGTTAGTTTCTAAAGGAAGGTCTCTTGTTGGCTATGACACAGATACAAGACCTGTAGAATCAGTATTTGGTTCTGCTACTGCAACACTTACACAAAATAACATTCCAAGTCACACACACTCTGTGTTGCTAACTGGTGGTGGACACTCTCATAATGCAACAGTAGTAATTTCTAGCTTTGACTATGGGATTAAGAACACATCAAGTTTTGATTATGATTCTAAGGCCACAAATGACTCTGGAAGCCACGCTCATAACGTTAATGGTTCTGTAAGCAGTGCTGGTAGTCACAGCCACAGGATTCCATTGAGGGGTTCTGACAGGGGTGGTGTGAATGCTATCACAGCATCGGCTGATGCAGGTATTGGTAATGCGTCATATACAGACTTTGATGGGGTTCATACACATACATTCAACGTTAACTCTTCAGTTGGTGGTAACCACTCTCACAGTGTGTATATTGGAGCACATGGACACAGTGTTGTAATTGGTTCGCATGGACACTCTGGTACTGTGACAGTTCAATCTTCTGAACACACTCACTCAGGTACAACTGGTGCATTTGGTGCTGGACAAGCATTTAATATTGAGCAACCTTCTTATGTTGTATATGTTTGGAAGAGAACTGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
31767f675ecb711207d13e4420e9d93a87cdc616664a78bbb14d94740ddea8e1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7068
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank