Protein

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Genbank accession
YP_009222185.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MATQPTNPIIKIAENDVNLPSTGKPNKNEPSSPIQTIGYDKNQVVTAEELNYILNNISEWQTYFKDFTEELQTEFDSKIQELEDQIEKERVSIGEIIEITGDSTNPSILKGYGTWESFGGGLTTVGVGSHTDDRGENKTWTDGQTEGEYQHVQTESELAQHNHTFSGTTEDNTVATSITQYLTPNGTDTGTAQQQIMGIPQNTDLTHNHTFSGTTDNTGSSSPMNNTQPSIAVYRWKRTA
Physico‐chemical
properties
protein length:240 AA
molecular weight: 26510,31570 Da
isoelectric point:4,45739
aromaticity:0,07083
hydropathy:-0,85583

Domains

Domains [InterPro]
DC_0413
STR
1–240
DC_0413
Coil
Unmapped
68–88
Coil IPR053827
SSF88874
STR
125–234
SSF88874
YP_009222185.1
1 240
Architecture
STR
ATT
STR 1-92 | ATT 93-240
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage qdvp001
[NCBI] 		1003177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009222185.1 [NCBI]
Genbank nucleotide accession
NC_029057 [NCBI]
CDS location
range 103820 -> 104542
strand +
CDS
ATGGCAACACAACCAACAAACCCTATCATCAAGATAGCGGAAAATGATGTAAATTTACCTAGTACAGGGAAACCTAACAAGAACGAACCTAGTTCACCCATACAAACCATAGGTTATGATAAAAATCAAGTCGTAACTGCTGAAGAACTTAATTATATTTTAAACAATATATCTGAATGGCAGACGTATTTCAAAGACTTCACAGAGGAACTTCAAACGGAGTTTGATAGTAAGATCCAAGAGTTAGAAGACCAAATAGAGAAAGAACGTGTTTCCATAGGGGAGATAATCGAGATAACGGGTGATTCAACAAACCCCTCGATACTCAAAGGGTATGGTACTTGGGAATCTTTTGGAGGAGGTCTTACAACAGTTGGTGTGGGCTCCCACACAGATGATAGAGGTGAGAACAAAACATGGACAGATGGTCAGACTGAAGGTGAATACCAACACGTTCAAACAGAATCTGAACTTGCCCAACACAATCACACTTTCTCAGGTACAACGGAAGATAATACAGTAGCTACAAGTATAACACAATACTTAACACCTAATGGGACAGATACAGGTACAGCTCAACAACAAATTATGGGTATACCTCAAAATACCGACCTTACTCACAATCACACTTTCTCAGGTACCACTGACAACACCGGTTCAAGTTCTCCTATGAACAATACACAACCAAGTATTGCAGTTTATCGCTGGAAGAGAACCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83d266938f581da5fb0ead9a2dc240a2bcdb7af8da4b054cc7c70fc1acabd9a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7608
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus phage qdvp001 Wang,W., Wang,J. and Lin,H. 2016-07-04 — GenBank