Protein

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Genbank accession
YAO55094.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSFFAGRFPDGKTVFSLNSQSGGDTNIHYSPNNNSIFHSDMPHVMIESTTEAGLSGSSYGYYVGSVPDAVRIALNSSPNRVILVEVIINIDGQEYSHLVQGGGVGSGTAVYGNILISGGPGNWLQQSGGYGRTCLHASADSVLDIGYYNAGAGDISLQVARGTGGIYDICYESAGSILSHAPSPTPTPEAWAAIGSTCVYAGGSAYTAAMNIDYIRPPHQKNAGYSNFFVRMRSPTRECASVAGFNMGIPDTPQGTEVNLLARLPRPNITPTYSVRSAVRGTELYSGNINRSHALYSGTPVRVRWHITNLVYTDSGYSIRNIFTGSDIILSSSDFTIKGVNMMGSQVRMLSDVAVGSLAVRGDIDIIGGNIMRPDITYTGDLPMSLANKSNGSATFSGGSSGGWSASTLSINYFPSNANWYVNSSSNSIGNRWGDVWSPSRIPLKLITGGAQASFAQKYQTIGTGRSHTTLSTLNLGLITTRQSVVVCSMEFLDMSWLTCGASGGQNPVSNKAGVPANTPQALLMSGGYIAYNISHQILTLPVGWYVPIYTWNSSSYYPAGNIDWGYTQGLSTISQVYYLRNLGNGQVELSVTVTNSVGASIYISLPSFKFTIQRLT
Physico‐chemical
properties
protein length:617 AA
molecular weight: 65681,75560 Da
isoelectric point:7,64004
aromaticity:0,09887
hydropathy:-0,06483

Domains

Domains [InterPro]
IPR059609
RBD
1–617
IPR059609
YAO55094.1
1 617
Architecture
RBD
RBD 1-617
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAO55094.1
1 617
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4848
Central domain 11 384 375 0,9066
C-terminal 385 617 232 0,8994
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-384
C-terminal
385-617

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_CECAV_033
[NCBI] 		3456260 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAO55094.1 [NCBI]
Genbank nucleotide accession
PX061015 [NCBI]
CDS location
range 111351 -> 113204
strand -
CDS
ATGAGCTTCTTCGCGGGAAGGTTCCCAGATGGGAAGACAGTTTTTTCTTTAAATAGTCAAAGTGGAGGGGATACTAATATTCATTATTCCCCTAATAATAATTCTATCTTTCATTCAGATATGCCTCATGTAATGATTGAGAGTACCACTGAGGCAGGCCTATCTGGATCTTCCTATGGTTACTATGTAGGTTCAGTGCCAGATGCCGTACGAATAGCCTTAAACTCCTCCCCCAATAGGGTGATTCTAGTAGAGGTTATTATTAATATAGATGGACAGGAGTACTCTCATTTAGTACAGGGTGGTGGTGTAGGTTCTGGTACTGCCGTTTATGGAAACATTTTAATCTCAGGTGGCCCAGGTAACTGGTTGCAGCAATCCGGGGGATACGGCAGGACCTGTTTGCATGCTTCCGCGGACTCAGTTCTAGATATAGGGTACTATAACGCAGGTGCTGGAGATATTAGTTTACAAGTAGCTAGAGGTACAGGTGGCATATATGATATTTGCTACGAAAGTGCTGGATCTATTCTGAGTCATGCTCCCTCCCCTACTCCCACTCCAGAAGCTTGGGCAGCTATAGGAAGTACCTGTGTATATGCTGGAGGTTCTGCGTATACAGCAGCTATGAACATTGATTATATTAGGCCACCACACCAGAAAAATGCGGGGTATTCTAACTTTTTTGTAAGAATGCGTAGCCCTACTAGGGAGTGTGCTTCGGTTGCTGGCTTTAATATGGGCATTCCAGATACTCCTCAAGGTACTGAAGTTAATTTACTGGCCAGGCTACCTAGGCCCAATATAACCCCTACTTACAGCGTTCGTAGTGCAGTTAGGGGTACTGAGTTATACTCTGGAAACATAAATAGGAGTCACGCTCTGTATAGTGGCACGCCTGTAAGAGTTAGGTGGCATATTACTAACTTAGTTTATACAGATTCCGGGTACTCTATAAGGAATATATTTACGGGATCAGATATAATACTTTCATCCTCTGATTTTACTATAAAAGGCGTGAATATGATGGGCAGCCAGGTAAGGATGCTATCTGATGTTGCGGTAGGTAGCCTAGCCGTTAGAGGGGATATTGATATTATAGGCGGAAATATAATGCGCCCAGATATTACGTACACAGGTGACTTACCTATGTCGTTAGCTAATAAAAGTAATGGTAGCGCAACGTTCTCCGGTGGGAGTAGTGGGGGATGGTCTGCTTCAACACTTAGCATAAACTATTTCCCTAGTAACGCCAACTGGTACGTTAATTCCTCCTCAAACTCTATAGGTAATCGTTGGGGGGATGTCTGGAGTCCTAGCCGAATACCTCTTAAGCTTATAACTGGAGGGGCTCAAGCTAGCTTTGCTCAGAAGTACCAAACTATTGGTACAGGACGTAGTCATACTACACTTTCAACATTAAACTTAGGTTTAATAACTACTAGGCAGAGTGTTGTTGTATGCTCTATGGAGTTTTTAGATATGTCCTGGCTTACTTGTGGGGCTTCTGGGGGCCAGAATCCTGTAAGCAATAAGGCAGGTGTACCCGCTAATACTCCTCAGGCCCTTCTGATGTCGGGCGGCTATATAGCGTATAATATATCCCATCAAATATTAACGTTACCTGTAGGTTGGTATGTGCCTATTTATACATGGAATTCTTCTAGCTACTACCCCGCAGGTAATATAGATTGGGGATACACGCAGGGTTTATCTACTATCTCTCAGGTTTATTACCTTAGAAACTTAGGAAATGGACAAGTAGAGCTATCCGTTACGGTTACTAATAGTGTAGGGGCTAGTATTTATATTTCTTTACCAAGTTTTAAATTTACAATACAGAGGTTAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8c19ad1b7b710a61e879ce9b001463313ccfe99237101541e38638927b6b230e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6734
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50