Protein

View in Explore
Genbank accession
AXY83364.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPAARYWRVSGAAAYAGGDLELSELHLCSGSGDASFNNVVLLVQGAGADGSTAFTDKSLSAKTLVPAGDVQNSETEKRFGNPSVRFDGTGDYIIGPKSADFAFGTGDFTVEAHVFQEVRTADVILVSLRDAASGIFSGPVRISSAGKVGLSDGSSWRETTDSVPVGAWSHVAVSRAGGTLRIFIDGVVGYTTTDPLDFSGARLLYIGAYEAYGGNPAGGFFQGYLDQIRITKGVGRYNTNFNPPPSPFATSTTVSYIRADEAATMICTGNPLTGTVADLRDEDTSSFARFSPRNSGFAFVWDFGAGQTADIAMVHPGSTTSRDRFLSHCDLHYSTDGSTWTVLAKIGRFNWPGPYQMADLTTFSGIPVGAVGVGQSMVVASDPPDGPVRARLIDGPHRLRDIYFAGRGFIAGTVKEKNTPSNVPLRRRVRLYRDRDGLLISETWSDRATGEYRFDEIDETERYTTVAYDHLHNYRAVLADNLTPEIMS
Physico‐chemical
properties
protein length:488 AA
molecular weight: 52443,61770 Da
isoelectric point:5,34982
aromaticity:0,10451
hydropathy:-0,21168

Domains

Domains [InterPro]
DC_2085
STR
7–217
DC_2085 DC_1745
IPR013320
STR
52–232
IPR013320
G3DSA:2.60.120.200
STR
85–308
G3DSA:2.60.120.200
PF13385
LEC
87–231
PF13385
AXY83364.1
1 488
Architecture
STR
RBD
STR 7-308 | RBD 309-488
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidovorax phage ACPWH
[NCBI] 		2301642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Acidovorax citrulli
[NCBI] 		80869 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXY83364.1 [NCBI]
Genbank nucleotide accession
MH727593.1 [NCBI]
CDS location
range 23232 -> 24698
strand -
CDS
ATGCCGGCAGCACGATATTGGCGTGTGTCGGGTGCGGCCGCTTACGCCGGCGGTGACTTGGAACTTAGCGAACTGCACCTGTGCTCTGGCAGCGGGGACGCTTCGTTCAACAACGTGGTTCTCTTGGTGCAGGGGGCGGGCGCAGACGGATCGACTGCGTTCACGGACAAAAGTCTGTCAGCGAAAACGCTCGTTCCAGCAGGCGACGTGCAAAACAGCGAAACCGAGAAACGATTCGGAAACCCCAGCGTCCGGTTCGACGGCACGGGTGACTACATCATCGGCCCCAAGAGTGCCGACTTTGCGTTCGGCACTGGGGACTTCACGGTCGAGGCACACGTATTCCAAGAGGTTCGCACCGCAGACGTGATCCTCGTATCGTTGCGCGACGCTGCCAGCGGCATCTTTTCAGGCCCGGTGCGCATCAGTTCGGCGGGCAAGGTGGGCCTGTCGGACGGGAGCTCGTGGCGTGAAACCACAGACAGCGTGCCGGTGGGCGCGTGGAGTCACGTGGCCGTGTCTCGTGCCGGAGGTACGCTTCGTATCTTCATCGACGGAGTGGTCGGCTACACCACAACCGACCCACTGGATTTCAGCGGTGCGCGGCTACTGTATATTGGTGCATACGAAGCTTATGGCGGAAATCCCGCGGGTGGTTTCTTCCAAGGCTATCTCGACCAGATACGCATCACCAAAGGCGTTGGTCGCTACAACACCAACTTCAACCCGCCACCTAGTCCGTTTGCGACATCGACGACAGTCTCGTATATCCGAGCTGATGAAGCGGCTACGATGATCTGTACCGGCAACCCCTTGACCGGCACAGTGGCCGACCTCCGAGACGAAGACACAAGCAGTTTCGCGCGCTTCTCCCCTCGCAATTCCGGGTTCGCGTTCGTGTGGGACTTCGGCGCTGGACAGACAGCGGATATCGCCATGGTGCACCCCGGTTCGACGACAAGCCGAGACCGTTTCCTGTCGCATTGCGACCTGCATTACTCGACGGATGGCTCCACGTGGACCGTTCTCGCTAAGATCGGACGTTTCAACTGGCCCGGTCCATACCAGATGGCCGACCTGACGACATTCTCCGGCATACCGGTTGGCGCGGTCGGCGTTGGGCAGTCGATGGTTGTTGCCTCCGACCCGCCGGACGGCCCCGTGCGTGCGCGCCTCATCGACGGCCCGCACCGCCTGCGCGACATCTACTTCGCAGGCCGCGGCTTCATCGCTGGCACGGTGAAGGAGAAGAACACACCGAGCAATGTGCCGCTGCGCCGCCGCGTGCGCCTGTACCGCGATCGGGACGGCCTGCTGATCTCCGAGACCTGGAGCGACCGAGCCACCGGCGAGTACCGCTTCGACGAGATCGACGAGACCGAGCGCTACACCACGGTGGCCTACGACCACCTGCACAACTACCGCGCCGTGCTCGCCGATAATCTGACCCCGGAGATCATGTCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6886aa234082e8c88d00b664fb55c2359983f9ba4c98878bb2a5a470d68a9c84
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8220
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a wide host range bacteriophage infecting Acidovorax citrulli and application of phage as a biocontrol of bacterial fruit blotch Rahimi-Midani,A., Kim,J.-O. and Choi,T.-J. 2020-06-03 — GenBank