Protein

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Genbank accession
YP_009843779.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAVNIAAIKYIPDLPAVSALAGADLLHVSQGNTDKQATMTQLARFINDAAHPIGQLMFFGVKGKDPNTLFPGQSWTRYNAGRSLRVCLDNESNLGQNVGADQISLNTSQMPSHSHGAQGLVIQDNGNHQHNATTSWVGDHAHSAWTDAQGSHQHIVGLRSPNNHDGAGSIFGTSGGGGYNGAAAYGKGNNGIDLYPLTNVAGNHGHNVGIGGAGGHNHTLTTEWAGQHSHGIIGQVLANGSGAAITIVPNTVHVACWIRNS
Physico‐chemical
properties
protein length:261 AA
molecular weight: 27087,49480 Da
isoelectric point:6,63387
aromaticity:0,05747
hydropathy:-0,29655

Domains

Domains [InterPro]
DC_0033
STR
3–261
DC_0033
IPR053827
ATT
48–142
IPR053827
YP_009843779.1
1 261
Architecture
STR
ATT
STR
STR 3-47 | ATT 48-142 | STR 143-261
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009843779.1
1 261
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,9956
Central domain 50 248 200 0,0012
C-terminal 249 261 12 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-248
C-terminal
249-261

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_LIET2
[NCBI] 		2508071 Uroviricota > Caudoviricetes > Lietduovirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009843779.1 [NCBI]
Genbank nucleotide accession
NC_048751 [NCBI]
CDS location
range 53874 -> 54659
strand +
CDS
ATGGCTGTGAATATTGCCGCAATTAAGTATATCCCCGACCTGCCCGCCGTTTCCGCGCTGGCTGGTGCCGACCTGTTGCACGTCTCGCAGGGCAACACCGATAAACAGGCCACCATGACCCAGCTGGCCCGCTTCATCAATGACGCTGCGCACCCTATCGGCCAGCTGATGTTCTTCGGCGTTAAAGGCAAAGACCCTAATACCCTTTTCCCCGGCCAGTCATGGACCCGTTACAACGCCGGGCGAAGCCTTCGTGTGTGTCTGGATAATGAATCGAACCTGGGGCAGAACGTCGGCGCAGATCAGATCTCACTGAACACGTCGCAGATGCCATCCCATAGCCACGGCGCGCAGGGTCTGGTGATTCAGGATAACGGCAACCACCAACACAACGCCACGACGTCATGGGTCGGAGATCACGCCCACTCAGCATGGACCGATGCGCAGGGTAGCCATCAGCACATCGTGGGCCTTCGCAGCCCAAATAACCATGATGGCGCTGGCAGTATTTTTGGGACCAGCGGCGGCGGTGGTTATAACGGTGCGGCGGCATATGGTAAGGGTAATAACGGTATTGACCTGTACCCGCTAACGAACGTGGCGGGAAACCACGGCCACAACGTCGGCATCGGCGGCGCTGGCGGTCATAATCACACCCTGACGACGGAATGGGCGGGGCAACACTCACACGGAATTATTGGTCAGGTGCTGGCTAATGGTAGTGGTGCGGCAATCACCATCGTTCCAAATACCGTTCATGTAGCGTGCTGGATAAGGAATTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
13dee0cbcec192d637b6282323849c7c6062a6fadca4d719a410bf8b54208712
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7391
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagM_LIET2 Truncaite,L., Simoliuniene,M., Kazlauskas,D., Meskys,R. and Simoliunas,E. 2011-08-10 — GenBank