Protein

View in Explore
Genbank accession
WYV70505.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,60
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQINGWSSETQGLQKRPPTTFTKRLQNKGFLGTKPLVHLINRDAQEQYFVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNTVCQMGSTLTNPSYPRLDGRALINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGDPYAGMNQVDMTDASWIAGELARQLQATLGPSGWSFQAGTGWILITAPANDNVRQIATKDGYADTLLNGFIYQVQTFTKLPANAPDGYIVEITGESARSGDNYWVKYDASGKVWKETAKPKIISGFNAATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFIGASINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYITNTVHAIHGSGTENFVSILSDGSPNKVFIYKFLYLDEILQQQSFSHWEFGDAATTRVLAASCIGSYCYLMIDRPEGLCLERMEFTQHTIDYSIEPYRTYMDMKKTIVLGGYNIDTNLTSFDVRTAYGGTPGPESTFYTIDQQGVLIEHEARDWATNPYITFVGNRAGEQMVIGKQYTFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEESGSFEINVNNGSSEFVYVMTGGRLGTQRVLGELSVGTGQFKFPVTGNAVNQRVTITSSNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:808 AA
molecular weight: 88934,44380 Da
isoelectric point:5,65744
aromaticity:0,11139
hydropathy:-0,29406

Domains

Domains [InterPro]
IPR058003
TTP
1–808
IPR058003
WYV70505.1
1 808
Architecture
TTP
TTP 1-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYV70505.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9902
Central domain 142 340 200 0,3312
C-terminal 341 808 467 0,1777
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BIM BV-99
[NCBI] 		3137290 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya dadantii
[NCBI] 		204038 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYV70505.1 [NCBI]
Genbank nucleotide accession
PP566124 [NCBI]
CDS location
range 24615 -> 27041
strand +
CDS
ATGGGACTCGTAAGCCAAAGCGTCAAGAACCTCAAAGGAGGTATCTCGCAACAACCAGACATCCTTCGGTTCTCCAACCAAGGCGCTCTGCAAATCAACGGGTGGTCCTCAGAGACTCAAGGTCTTCAGAAGCGTCCACCGACCACCTTCACCAAGCGGCTCCAGAACAAGGGTTTCCTCGGCACCAAGCCGCTGGTTCACCTCATCAACCGGGACGCCCAAGAGCAATACTTTGTGGGCTTCTCTGGGACTGGTCTGGCAGTCTGGGACCTGAAGGGCAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGTGCCAACCCTCGGACTGACCTGCGCCTCATCACCGTGGCCGACTACACCTTCGTGGTTAACCGGAACACCGTGTGCCAGATGGGATCGACCCTGACTAACCCTTCGTACCCACGGCTGGATGGTCGAGCGCTCATCAACGTGCGTGGTGGTCAGTACGGTCGAACCCTGTCTATCACCATCAACGGTGACGGCACTGGGTCAAGTCCTCAAGCGTCCATTAAGATGCCCAACGGTTCCGCCGAGAAGGTGCCTGCTGGTGACCCATACGCTGGCATGAACCAAGTCGATATGACTGACGCATCGTGGATCGCTGGTGAGCTTGCGCGACAACTTCAGGCGACCCTCGGGCCTTCTGGGTGGTCGTTCCAAGCAGGCACCGGGTGGATTCTCATCACGGCCCCGGCCAACGATAACGTCCGTCAGATCGCAACCAAGGACGGCTACGCTGACACCCTTCTCAATGGGTTCATCTATCAGGTCCAGACCTTCACGAAGCTCCCTGCGAACGCCCCTGATGGCTACATCGTGGAGATCACTGGCGAGTCTGCCCGGTCTGGTGACAACTACTGGGTCAAGTATGACGCCTCTGGGAAGGTCTGGAAGGAGACAGCGAAGCCCAAGATCATCTCTGGGTTCAACGCTGCAACGCTCCCACACGCGCTCGTGAGGGCCGCTGATGGGCAGTTCGACTGGACTCCACTGACGTGGGATGGACGCAACGCTGGTGACGATGACACGAACCCAATGCCGTCCTTCATCGGCGCTTCGATCAACGACGTGTTCTTCTTCAGGAACCGCTTGGGTTTCCTCTCGGGTGAGAACGTCGTGATGTCTCGGACCTCGAAGTATTTCAACTTCTTCCCGAGCAGCGTGGCGACCCTGAGCGATGACGACCCAATCGACGTGGCTATCTCGCACAACCGCATCTCGATCCTGAAGTACGCTGTGCCTTTCTCCGAGCAGCTCCTGCTGTGGTCCGACCAAGCTCAGTTCGTTCTGTCGAGCAACGGCATCCTGTCGAGCAAGACCATCGAGCTGGACCTGACCACTGAGTTCGACGTGAGCGATGGTGCCCGTCCCTATGGGATTGGTCGTGGGGTTTACTTCGCAGCTCCACGGGCCTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATCACGAACACCGTCCACGCGATCCACGGGTCTGGTACTGAGAACTTTGTGAGCATCCTTTCGGATGGCTCGCCAAACAAGGTCTTCATCTACAAGTTCCTGTACCTCGACGAGATTCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGCGATGCGGCCACAACCCGTGTCCTCGCAGCCTCGTGCATTGGCTCCTACTGCTACCTGATGATCGACCGACCAGAGGGCCTGTGCCTTGAGCGTATGGAGTTCACGCAACACACCATCGACTATTCCATCGAGCCTTACCGGACCTACATGGACATGAAGAAGACCATCGTCCTCGGTGGCTACAACATCGACACGAACCTGACTTCGTTCGACGTTCGGACTGCCTATGGTGGAACTCCGGGTCCTGAGTCCACGTTCTACACCATTGACCAGCAAGGGGTCCTCATCGAACACGAGGCACGGGACTGGGCGACCAATCCATACATCACGTTCGTGGGTAACCGGGCTGGTGAGCAGATGGTGATCGGCAAGCAGTACACCTTCCAGTACGAGTTCAGCAAGTTCCTCATCAAGCAGACCGCTGACGATGGGTCCACCTCGACCGAGGACATTGGACGATTGCAGCTTCGTCGTGCGTGGCTGAACTACGAGGAATCTGGTTCCTTCGAGATCAACGTCAACAACGGCTCCAGTGAGTTCGTCTACGTTATGACTGGTGGTCGCCTCGGGACTCAACGAGTCCTCGGTGAGTTGTCCGTGGGTACTGGTCAGTTCAAGTTCCCTGTGACCGGCAATGCCGTCAACCAACGAGTTACCATCACCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAGGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9ddd4575bef234a6efecbcf76c47d8be4f7297ee5b5be16c2fff5e9b7d3de122
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3142
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The bacteriophage DdN1 - a component of the biopreparation Multiphage-S used to control bacterial diseases tomato Pilipchuk,T.A., Maximova,A.M., Girilovich,N.I., Orlovskaya,P.I., Akhremchuk,A.E., Valentovich,L.N. and Kolomiec,E.I. 2021-12-27 — GenBank