Protein

View in Explore
Genbank accession
QKN88271.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MATHDYVLDNATGANFRADINLALAAIVSNNSSATEPSTKYAYQWWADTNDGVLKIRNSANDGWVTLLQLDGTLTLEDGSNSAPALGFRDDLNTGIFSSAADTLDVTCGGTTRGSFSASGLAVTGSVTATTFVGNVDAVDGDFDGTLEADAITVAGTALSTVIAGTTLTQAAQTNITSLGTLTGLTVGGDVTFDGATTGRDIVFDRSDNALEFADNAKAKFGSSEELEIYYDGTNPIFYAGTKTVRVVADNIHFEAGDFGDEFIRCNHDASVDLYYDNSKKFETTSSGINVTGQADVDSINCTGELDLTGHLDLNSDSSRIKLGAGDDFQLYHDGSNNYIFTNNGDIIVQTDGDDIQLLASDDVIIKVQGGLETAINCIGDGAVELYHNNSKKLETNSSGVNVIGSLTVDGSAISGGGGKILQVVQQTKTDTATHSVNINQGAANFSLIMSKSITPANSSNKILVQFSISGNVEANGTHVDFVLRKTVGSTVTHPILGDSASGYTSITTGFRSGGGNQHNVGQCIYQFLDDAGTTSAITYGVAVATEGATTYRVNASGGDLSSQSWSSRQASTIVLMEVSA
Physico‐chemical
properties
protein length:581 AA
molecular weight: 60470,23240 Da
isoelectric point:4,26363
aromaticity:0,07057
hydropathy:-0,11394

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QKN88271.1
1 581
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,9409
Central domain 12 210 200 0,0988
C-terminal 211 581 370 0,9263
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-210
C-terminal
211-581

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-HS2
[NCBI] 		2740745 No lineage information
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QKN88271.1 [NCBI]
Genbank nucleotide accession
MT490303.1 [NCBI]
CDS location
range 589 -> 2334
strand +
CDS
ATGGCAACGCATGATTACGTTTTAGATAATGCCACAGGTGCTAATTTTCGTGCAGATATAAATTTAGCCCTTGCAGCTATCGTAAGTAATAACTCATCAGCAACTGAACCAAGTACAAAATATGCTTATCAATGGTGGGCGGATACTAATGATGGTGTTTTAAAAATAAGAAATAGTGCAAATGATGGCTGGGTTACTTTATTACAACTTGATGGAACTTTAACCCTTGAAGATGGCTCAAACTCCGCACCCGCACTAGGATTTCGGGACGATTTAAATACTGGTATTTTTTCAAGTGCTGCTGACACTTTAGACGTTACTTGTGGAGGAACAACAAGAGGTAGTTTTAGTGCTTCTGGTTTGGCAGTTACAGGAAGTGTTACTGCTACAACCTTTGTTGGAAATGTAGATGCTGTCGATGGAGACTTTGATGGAACTCTTGAAGCTGATGCTATAACTGTTGCTGGAACGGCTTTATCAACTGTTATTGCGGGAACTACTCTTACACAAGCAGCACAAACAAATATTACTTCTCTAGGTACTCTTACAGGATTGACTGTTGGTGGGGATGTAACTTTTGATGGTGCTACTACTGGCAGAGATATTGTTTTTGACAGATCAGATAACGCATTAGAGTTTGCTGATAATGCTAAAGCTAAATTTGGTTCTTCTGAAGAGCTTGAAATTTATTATGATGGAACGAATCCTATCTTTTACGCTGGCACAAAAACTGTAAGAGTAGTTGCTGACAATATACATTTTGAGGCTGGAGATTTTGGAGATGAATTTATTAGATGTAATCATGATGCATCAGTTGATCTCTATTATGACAACAGTAAAAAATTTGAGACAACCAGTTCTGGAATAAATGTTACTGGACAAGCTGATGTTGATAGTATTAATTGTACTGGTGAGTTAGATTTAACTGGACACCTTGATTTAAACTCTGACAGCTCCAGAATTAAACTCGGAGCTGGGGATGATTTTCAGCTATATCACGATGGTAGTAATAACTACATTTTTACTAACAATGGCGATATAATTGTGCAGACTGATGGTGATGACATTCAGTTATTAGCTAGTGATGACGTGATAATAAAAGTTCAAGGAGGTCTTGAAACTGCAATCAATTGTATTGGTGACGGTGCAGTAGAGCTATATCATAACAACAGTAAAAAATTAGAAACCAACAGTTCTGGCGTGAATGTTATTGGGAGCTTAACCGTTGATGGTTCAGCTATAAGTGGTGGTGGTGGAAAAATTTTACAAGTAGTTCAACAAACTAAAACTGACACTGCCACTCATTCTGTAAATATAAATCAAGGTGCAGCAAATTTTTCTTTAATTATGAGCAAATCAATTACACCCGCAAATTCATCAAACAAAATTCTTGTTCAATTCAGTATTTCAGGTAACGTAGAAGCTAACGGTACGCACGTTGATTTTGTGTTAAGAAAAACAGTAGGAAGCACAGTCACACACCCAATTTTAGGAGACAGTGCAAGCGGATATACCTCAATTACAACTGGTTTCAGAAGTGGAGGAGGAAATCAACATAATGTCGGACAATGTATTTATCAGTTTTTAGATGATGCTGGAACAACATCTGCTATAACTTATGGTGTCGCAGTCGCTACAGAGGGGGCAACAACTTATAGGGTTAATGCAAGTGGTGGTGATTTAAGTAGCCAATCTTGGTCATCAAGACAGGCCAGTACTATAGTATTAATGGAGGTTTCAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b46dd359cfc6e1fae94a226e061f355e2c0c2442bbe09b2be60f5e5fd999e0dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7676
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Frequency of mispackaging of Prochlorococcus DNA by cyanophage Laurenceau,R., Raho,N., Forget,M., Arellano,A. and Chisholm,S.W. 2020 — GenBank