Protein

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Genbank accession
WWO60311.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKTVGTMSQLIHGVSEMEPHNRQPGKMWESVNFFDSPTKGKSRRRGTRYMHEIRLTSGDVQARNEAAQMQEYTFFIDGYEYSLIYRQQASTQGKPTFAVLLSKDDGKFYNLVYEDSTWVDNLVSGGVSALACIGRYVYIAGNTTIPKAVSTEVWDTPENLQKLAAWVREGVYSRTYTVQLTHITGTKVEYSYKTLSAAYPELLDTTDIPFYKDELDPDGNKVPDPEYQKHVNDRVNAYEGKKSEWIKKAAEDIVPANIASKLAEIITNAGIVATSMESCVLVDDPNYVDIKLLDGGNGSLVSYAGKEVADPQFVTLYHWAGKVVRVRPSGGGDKESYYLKAVPLDGGTGWTKVEWVETAGVVHKIENFLSQLVIDREKQEGYIAQNGEGLKSLAPQLGDHPIYKENAVGDSITAPVPYFFGRKISCLYVFQDRLMVCADNMVNMSRSGDYLNYFRQTVLNIQDNDPIEVFAHGSEGDTIKRAVMYDKDLVMFGELRQYSVSGKVFFSPSNPALNVVGNYEGGTRAQPIASGNYLFFGKHADERTGLHQMQPGDTPETTVVFEVSEELDNWLTGNPVQLLGTTKPDMITYRTDADPSIWYTYKYADRQGVGRVMASWGKCAYAPELGAIAGITHHRGDLLIVTLREGGGVNYWVVDRLSLNTDLADYPHLDSQVEYSKMGTTWHSVGTNLDVAARKPSTYFLMGGPLSEAASFIEQAPGVEPHLVVGSVSDGLFQITNPYARDSEGQPILAARLQITSYSFHLADTGGLSAFVLRPDPARTLLFEGRVLGNTSNVIGTQPVFTGARKVSVGKESRDCIVEVRTKDWQPLRVTGAEWSGQVFQPRARGMY
Physico‐chemical
properties
protein length:849 AA
molecular weight: 94097,78380 Da
isoelectric point:5,47873
aromaticity:0,10247
hydropathy:-0,34205

Domains

Domains [InterPro]
IPR058003
TTP
1–846
IPR058003
DC_0058
STR
1–849
DC_0058
WWO60311.1
1 849
Architecture
STR
STR 1-849
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60311.1
1 849
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9040
Central domain 193 404 213 0,2311
C-terminal 405 849 444 0,2856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-404
C-terminal
405-849

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SB4
[NCBI] 		3117473 No lineage information
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60311.1 [NCBI]
Genbank nucleotide accession
PP079415 [NCBI]
CDS location
range 25228 -> 27777
strand +
CDS
ATGGCGAAGACCGTAGGCACCATGTCTCAGCTGATCCACGGCGTGAGCGAGATGGAGCCGCACAACCGTCAGCCCGGTAAGATGTGGGAGAGTGTTAACTTCTTCGACAGTCCTACCAAGGGCAAGAGCCGCCGACGCGGCACGCGGTACATGCACGAGATTCGCCTGACCTCGGGTGACGTGCAGGCCCGCAATGAAGCCGCGCAGATGCAGGAGTACACCTTCTTCATCGACGGCTACGAGTACAGCCTCATCTATCGTCAGCAGGCTAGCACGCAGGGTAAGCCCACGTTCGCAGTCCTGTTGTCCAAGGATGACGGTAAGTTCTACAACCTCGTGTATGAGGATAGCACGTGGGTTGACAACCTCGTGAGCGGCGGAGTGAGCGCACTGGCCTGCATTGGTCGGTACGTCTACATCGCAGGTAACACCACGATCCCGAAGGCAGTCAGCACGGAAGTGTGGGACACGCCGGAGAACCTGCAGAAGTTGGCAGCGTGGGTTCGTGAGGGTGTGTACTCCCGGACGTACACCGTGCAGCTTACGCACATCACTGGCACGAAGGTGGAGTACAGCTACAAGACTCTTTCGGCGGCGTACCCGGAGTTGCTGGACACCACGGACATTCCGTTCTACAAGGACGAGCTTGATCCTGATGGCAACAAGGTGCCGGACCCGGAGTATCAGAAGCACGTCAACGACCGCGTGAATGCGTACGAGGGCAAGAAGTCCGAGTGGATCAAGAAGGCGGCCGAGGACATTGTACCTGCGAACATTGCATCGAAGCTCGCAGAGATCATCACCAATGCAGGTATCGTGGCAACGTCCATGGAGTCCTGTGTGCTGGTGGACGATCCGAACTACGTGGACATTAAGCTGCTTGACGGCGGCAACGGTTCGCTGGTGTCGTACGCTGGTAAGGAAGTGGCTGATCCGCAGTTCGTGACGCTGTACCATTGGGCAGGTAAGGTTGTTCGTGTGCGCCCGAGTGGCGGCGGCGATAAGGAATCCTACTACCTCAAGGCCGTGCCGCTTGATGGCGGGACTGGCTGGACCAAGGTGGAGTGGGTGGAGACTGCGGGTGTCGTGCACAAGATCGAGAACTTCCTGTCCCAGCTGGTGATCGACCGTGAGAAGCAGGAAGGGTACATCGCTCAGAACGGCGAGGGCTTGAAGTCCTTGGCACCGCAGCTGGGTGATCACCCGATCTACAAGGAGAACGCAGTCGGGGATAGCATCACCGCGCCCGTGCCGTACTTCTTCGGTCGCAAGATCAGCTGCCTGTACGTGTTCCAAGATCGCCTGATGGTGTGTGCGGACAACATGGTCAACATGAGCCGCAGCGGAGACTACCTGAACTACTTCCGACAGACCGTGCTGAACATTCAGGACAACGATCCGATCGAAGTGTTCGCGCATGGTTCCGAGGGTGACACGATCAAGCGCGCAGTGATGTACGATAAGGATCTCGTGATGTTCGGGGAGCTTCGACAGTACAGCGTGAGCGGGAAGGTGTTCTTCTCCCCGAGCAACCCCGCACTGAACGTCGTGGGCAACTACGAAGGTGGCACCCGTGCGCAGCCCATCGCGTCCGGCAACTATCTGTTCTTCGGGAAGCACGCGGACGAACGTACTGGCTTGCACCAAATGCAGCCCGGGGATACTCCTGAGACTACGGTGGTGTTTGAAGTCTCGGAGGAACTGGACAACTGGCTCACGGGCAATCCCGTTCAGTTGCTCGGTACGACGAAGCCCGACATGATCACGTATCGGACGGATGCGGACCCCTCGATTTGGTACACATATAAGTACGCGGATCGTCAGGGTGTTGGCCGTGTGATGGCAAGCTGGGGTAAGTGCGCGTATGCGCCCGAACTCGGTGCCATTGCAGGGATCACGCATCACCGTGGTGACCTGTTGATCGTGACGCTCCGTGAGGGCGGCGGTGTGAACTACTGGGTTGTGGATCGGCTCTCGCTGAACACGGACCTCGCAGACTATCCGCATCTCGATTCGCAGGTGGAGTACAGTAAGATGGGGACGACGTGGCACAGCGTAGGCACAAATCTTGACGTTGCAGCGCGCAAGCCTTCCACTTACTTCCTGATGGGTGGGCCGCTGTCTGAGGCAGCGAGCTTCATCGAACAGGCTCCCGGCGTTGAGCCGCATCTTGTGGTCGGCAGTGTGTCCGATGGTCTGTTCCAGATCACGAACCCGTACGCCCGTGACAGTGAGGGTCAGCCGATCCTTGCCGCACGTTTGCAGATCACGTCGTACAGCTTCCACCTTGCAGACACGGGTGGCCTGTCCGCCTTTGTGCTGCGCCCTGACCCGGCGCGTACACTACTGTTTGAAGGTCGGGTACTCGGCAACACTTCCAACGTCATCGGCACGCAGCCAGTCTTCACGGGTGCGCGTAAGGTGAGCGTCGGTAAGGAGAGCCGGGATTGTATTGTTGAGGTACGGACGAAGGATTGGCAACCGCTTCGCGTCACTGGCGCTGAGTGGTCCGGTCAGGTCTTCCAGCCTCGCGCACGAGGAATGTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d05a847b96807394f9b4084aac259cd9b76767fbb409a6aea7bc16c6dbe149af
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3150
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank