Protein

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Genbank accession
YP_007673160.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MSTISQRIPNLLLGVSQQPDKLKFPGQVKQATNVFPDYALGLLKRPGGKFEAELYNAEARGRWFPILRDEEEKYVCQYDTTDGQFRIWSLIDGQPRAVDMGTTAATGQPSGCNITNLKSDLDVYNTAQDDTDTKLNDLNSKQATYTKTNDGQTATKVNLFDVDVTYKNGYYEESLKSGVLERIDNGQRIVKDDGTNAGSIAAGSAMPSGYSLGNERTDDYPWFKRDGYRVYEVEKEVAAAYNSTELSTANTNMGTAQTAYDNAVSTESTEKGDYDSEVTACNIGSSNIPASAYLKDAAPEDIEILTINDYTFVLNKNKTTAMKTTTSAAVPNVAFVVIRIVAYNSDYSVTLNGTTVTHSTPDTVAGATTDSGSIAAALTSSINALTGFSATQVGPGIYIEGTSAFSISTSGSTTEEGIFAFQDQINVASRLPNQCENGYRVRVTNSGDVTADDIYVEFQTTNSAARGPGVWEETIGPSLEFEIDETTMPHQLIRQANGVFKYEPVTWDDRLVGDNTTNPIPSFIGKKINNMFFYRNRLGLLSNEAVIMSRAGDYFNFFANSSQVVAPDDPIDLQATSVKPVTLNYTLATSIGLLVFGPNEQFVLSTDADILSPTTTKINTISTFECDAEIDAVAVGTTQAFISKSNLYSKLFLMLNVQKEAAATIDEATTNVPEYVPSDIDSMTASPAMSIVSLGKSGSNTVYQHRFFMQGENRVQTWYKWQLTGDLRLQFFDKTTFYAVTSSGSNVYLTSYDLTQASESGYLTLPTGEKTDVCLDMFNVNPYRTYSTSTKKTTVNLPFDHITGKKLAVVAIGTYIGDTISATSESEGSVFYFEDSDISSNQVLLNGDYRGRDLIIGYVYDMELELPTLYPTQVEGRSSVSDVTSDLILHRLKVSTGLSGPITYKVDITGKDEWTNIINVTLPNTYVLNNVNLSASALHDVPIYQRNENVNIKIIGDTPFPISLLNIVWEGNYNRRFYRRS
Physico‐chemical
properties
protein length:981 AA
molecular weight: 107592,22970 Da
isoelectric point:4,60182
aromaticity:0,09684
hydropathy:-0,30683

Domains

Domains [InterPro]
IPR058003
TTP
1–124
IPR058003 DC_1750 IPR058003
DC_1891
ATT
1–140
DC_1891
YP_007673160.1
1 981
Architecture
ATT
TTP
ATT 1-289 | TTP 290-979 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007673160.1
1 981
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,9933
Central domain 98 319 223 0,8447
C-terminal 320 981 661 0,2235
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-319
C-terminal
320-981

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIP2
[NCBI] 		754040 Uroviricota > Caudoviricetes > Autographivirales > Sednavirus SRIP2 >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673160.1 [NCBI]
Genbank nucleotide accession
NC_020838 [NCBI]
CDS location
range 16018 -> 18963
strand -
CDS
ATGAGCACTATTTCCCAAAGGATCCCTAACCTGCTCCTAGGTGTGTCCCAACAACCGGACAAACTTAAGTTTCCTGGGCAGGTTAAACAGGCTACCAACGTATTCCCTGACTATGCACTTGGTTTGCTTAAGCGACCTGGTGGTAAATTTGAAGCAGAACTTTACAATGCCGAAGCTCGTGGACGTTGGTTTCCGATCCTTCGGGATGAAGAAGAGAAGTATGTCTGTCAATACGACACCACTGACGGACAGTTCCGTATTTGGAGTTTGATTGATGGACAGCCTCGTGCTGTGGACATGGGTACCACTGCTGCTACTGGACAGCCTAGTGGTTGTAACATTACAAATCTTAAATCAGATTTAGATGTATACAACACAGCCCAAGATGATACAGATACTAAACTTAATGATCTAAATTCCAAGCAGGCAACATATACCAAAACTAACGACGGACAGACTGCTACTAAAGTTAACCTGTTTGACGTAGATGTGACCTACAAGAATGGTTACTACGAAGAGTCGTTGAAGTCTGGTGTACTTGAGCGTATCGATAACGGTCAACGTATTGTCAAAGATGACGGTACTAACGCTGGCTCGATCGCTGCAGGTTCTGCTATGCCTTCTGGTTATAGCCTGGGCAATGAGCGTACAGATGACTACCCATGGTTTAAGCGTGACGGCTACCGTGTCTACGAAGTAGAGAAAGAGGTAGCTGCTGCTTACAACTCTACCGAACTGAGCACTGCTAACACCAACATGGGTACGGCTCAGACTGCATACGACAATGCTGTCAGCACTGAGTCAACTGAAAAAGGTGACTACGACAGTGAGGTTACTGCTTGTAATATCGGTTCGTCAAATATCCCTGCAAGTGCTTACCTGAAAGACGCTGCTCCTGAGGACATTGAAATCCTCACGATCAACGACTATACCTTTGTCTTGAATAAAAACAAGACAACAGCAATGAAGACTACTACGTCTGCAGCTGTGCCAAATGTCGCATTTGTTGTCATCAGAATTGTTGCCTATAATTCTGACTATTCAGTCACCCTTAACGGTACTACCGTAACCCACTCTACACCTGACACAGTTGCAGGAGCCACTACTGACTCTGGTAGTATTGCAGCTGCTTTGACATCTTCAATCAACGCTTTGACTGGATTCAGTGCTACCCAAGTTGGACCTGGTATTTATATTGAAGGTACTTCTGCTTTTAGTATTAGTACATCTGGTTCAACGACTGAAGAGGGTATCTTTGCTTTCCAAGATCAAATCAACGTTGCATCTCGTCTTCCTAACCAATGTGAAAATGGTTACAGAGTTCGTGTGACGAACAGTGGAGATGTAACTGCAGATGATATCTACGTTGAGTTCCAGACTACTAACAGTGCAGCCCGTGGTCCTGGTGTGTGGGAAGAGACTATTGGTCCTAGTTTAGAATTTGAGATCGATGAGACTACCATGCCTCATCAGTTGATTCGTCAAGCAAACGGTGTGTTTAAGTATGAACCTGTGACTTGGGATGACCGTTTGGTCGGTGACAACACCACTAACCCTATCCCCAGTTTCATCGGTAAGAAGATCAACAACATGTTCTTCTACCGTAACCGCCTTGGTCTACTGTCTAACGAAGCAGTGATCATGAGCCGTGCTGGTGACTACTTTAACTTCTTTGCTAATAGCTCTCAAGTCGTTGCGCCTGACGATCCTATTGACCTTCAGGCTACCTCTGTCAAACCTGTTACACTGAACTACACGTTGGCTACTAGCATTGGTTTGCTGGTGTTTGGTCCTAACGAACAGTTTGTCCTGTCTACTGATGCTGATATCCTCAGCCCAACTACAACTAAGATCAACACCATCAGCACGTTTGAGTGTGATGCAGAGATCGATGCCGTAGCAGTAGGCACAACTCAAGCATTTATTAGTAAATCTAATCTATACAGTAAACTCTTCTTGATGCTTAACGTGCAGAAAGAAGCAGCTGCTACGATTGATGAGGCTACTACAAACGTACCTGAGTATGTGCCAAGTGATATTGATTCAATGACAGCCTCACCGGCTATGTCTATTGTGTCTCTTGGTAAATCAGGTTCAAACACCGTGTACCAGCACAGGTTCTTTATGCAAGGTGAGAACCGGGTGCAGACCTGGTACAAATGGCAACTGACTGGTGATCTGCGTTTACAGTTCTTTGATAAAACTACCTTCTACGCTGTTACTAGCTCTGGCAGCAACGTGTACCTGACGTCCTATGACCTGACACAAGCCAGTGAATCTGGTTACCTGACTCTGCCTACGGGTGAGAAAACAGACGTGTGTCTGGATATGTTCAATGTCAACCCGTACAGAACTTACAGCACTTCAACTAAAAAGACCACTGTTAACTTACCTTTTGATCACATCACTGGTAAGAAGCTAGCAGTTGTAGCTATCGGTACTTATATCGGTGATACAATTTCTGCTACCAGCGAGTCCGAAGGTTCGGTGTTTTACTTTGAAGACTCTGATATATCCAGCAATCAAGTGCTGCTAAACGGTGATTACCGTGGACGTGACTTGATTATTGGATATGTGTACGACATGGAGTTGGAGCTACCTACTCTGTATCCTACACAGGTTGAAGGTCGGAGCAGTGTATCTGACGTTACCTCTGATCTAATCCTACACCGTCTTAAGGTCTCCACAGGTCTTAGCGGTCCTATTACCTACAAGGTTGATATCACAGGTAAGGATGAGTGGACTAACATTATTAACGTTACGCTGCCTAATACCTACGTATTGAACAACGTCAACCTTTCTGCTTCTGCTTTACACGACGTTCCTATCTATCAACGGAACGAAAACGTTAACATCAAAATCATTGGAGATACTCCTTTCCCAATCAGTCTGCTAAACATCGTTTGGGAAGGTAACTACAACCGTCGATTCTACCGCCGCTCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a5e24b16edd23c0a93c31e94912015f8f366c391e5c4f290e4c0b215625bed0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2958
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIP2 isolate N1_2007 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank