Protein

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Genbank accession
YP_010844160.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MDSIMEKMMARFGDGYTKTQVISENNSIKYKFSFAAGSELSTPSLGYFTFQDERIGDQQDGVGINVREFNPAMNTISPKKTFNFLQEDSGSPNKAFLEYLTTFPPTSKNLLVFTTFGDFNQSPSIEAKFKSFWSTMWPSKWHTDNYFVIYAGLYSIEANRMIAENVTYTDRVIRQEDLRPAIEYVYDKANDIGATGFSYRALEDFNEYVSSEDTIKRYPISDTLGVPIASVGIKVADKMLWSFEFLQSVEMNPGGRNIRVSLRWISNSGSLIKSENIDFNPANAGNWIKSEKNIEVPVGAERYTIVVSKTTGSNTDGSGGVRSMVLTKVSRALESSASTSISVNGVRMNSAVSGDDPTLLKMSVPEVDSNGKPLPGEDLSGHVYSADWREFEKDI
Physico‐chemical
properties
protein length:395 AA
molecular weight: 44006,74070 Da
isoelectric point:4,99822
aromaticity:0,11139
hydropathy:-0,38608

Domains

Domains [InterPro]
DC_0912
STR
1–395
DC_0912
PS52031
LEC
26–201
PS52031
YP_010844160.1
1 395
Architecture
STR
STR 1-395
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010844160.1
1 395
Domain Start End Length (AA) Confidence
N-terminal 1 55 55 0,4606
Central domain 56 254 200 0,5390
C-terminal 255 395 140 0,4824
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-55
Central
56-254
C-terminal
255-395

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage KM16
[NCBI] 		2797303 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010844160.1 [NCBI]
Genbank nucleotide accession
NC_070779 [NCBI]
CDS location
range 166973 -> 168160
strand +
CDS
TTGGATTCCATAATGGAAAAAATGATGGCGAGGTTTGGTGATGGATATACCAAAACTCAAGTTATTTCAGAAAATAATTCCATCAAATATAAGTTTTCATTCGCGGCGGGGTCGGAATTATCGACCCCTTCTTTAGGATATTTCACCTTTCAAGACGAACGAATCGGTGACCAACAAGATGGTGTTGGTATAAATGTCCGTGAATTCAATCCAGCGATGAACACTATATCACCAAAGAAAACTTTCAACTTTTTACAGGAAGATTCTGGATCTCCAAACAAAGCATTTTTAGAATATCTTACTACATTTCCTCCGACAAGCAAAAATCTTTTAGTCTTTACTACATTTGGCGACTTTAATCAATCTCCATCTATTGAAGCTAAATTTAAGTCTTTCTGGAGTACTATGTGGCCGAGTAAATGGCATACAGATAATTACTTCGTCATTTATGCCGGGCTTTATTCGATCGAAGCTAATAGAATGATTGCTGAGAACGTCACTTATACTGATAGAGTAATTAGACAAGAAGATCTTCGACCTGCTATTGAATATGTCTATGATAAAGCCAATGATATTGGTGCAACTGGATTTTCTTACAGAGCGTTAGAAGATTTTAATGAGTATGTTTCTTCTGAAGACACAATAAAGCGGTATCCGATATCAGATACTTTGGGTGTACCTATAGCATCTGTAGGAATAAAAGTTGCCGACAAAATGCTTTGGTCATTTGAATTTCTACAGAGTGTAGAAATGAATCCAGGAGGCAGAAATATACGAGTCAGTCTAAGATGGATTTCAAATTCTGGAAGTTTAATTAAAAGCGAAAACATTGATTTTAATCCGGCAAACGCTGGAAATTGGATTAAAAGTGAAAAGAACATTGAAGTTCCAGTTGGGGCAGAAAGATACACTATAGTTGTATCTAAAACTACCGGATCCAATACTGATGGTTCAGGAGGTGTTCGTTCAATGGTGCTAACTAAAGTATCTAGAGCATTAGAATCTTCTGCTTCAACATCAATTTCCGTTAATGGCGTAAGAATGAACTCAGCAGTTTCTGGAGATGATCCAACTCTGCTTAAAATGTCAGTTCCTGAAGTGGATTCAAATGGTAAACCTTTACCGGGAGAAGATCTTTCTGGACACGTTTATAGTGCAGATTGGCGTGAGTTTGAAAAAGATATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
528fa3fdeb86141ed911bb3339a600b2e5cb105ba711877e6b9fca9545e2f99e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6038
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization, and Application of Salmonella paratyphi phage KM16 Against Salmonella paratyphi Biofilm Jiang,L. 2021-03-16 — GenBank