Protein

View in Explore
Genbank accession
YP_007877606.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSTLNVNTLHASSVNNFEINFDDGESMVVAGTCLATALNNFKLPSGTTAQRPASPSVGMIRFNTEELQVEVWNGSSWTQVIRASSGGNDGGTPASAASSVQELMDAGVAADGNYYLNLDGTTRRYFVPVNSHPYYLLIGNWGGGGAAFFSNASSLTGQNLNDTGDSTPTGNFASNSTWGYYRNVSGSDYRYATFSNRGVSYRYVKMRFNLYNYYSNDGVNGRNFLNISSGVGDGMTIMRNNSGAGDGQHIFTYYTAISNNDGNSCPSVAGMQPTHVAGGNNPGGFMGNRYTCFSRSGSSFTSEYVRNFTVQPGDNSGGTGPNVFNGDAWFTVDLGTSYSDDMHIVIHSDQDSGNEDTYLKRGCVLVRPA
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39499,46550 Da
isoelectric point:5,03846
aromaticity:0,11653
hydropathy:-0,42954

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007877606.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,8630
Central domain 82 280 200 0,0110
C-terminal 281 369 88 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-81
Central
82-280
C-terminal
281-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM1
[NCBI] 		536444 Uroviricota > Caudoviricetes > Pantevenvirales > Emcearvirus > Emcearvirus gerard
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877606.1 [NCBI]
Genbank nucleotide accession
NC_021071 [NCBI]
CDS location
range 27818 -> 28927
strand -
CDS
ATGAGTACCTTAAACGTTAACACGCTACACGCATCCTCGGTGAATAACTTCGAGATCAACTTCGATGATGGAGAATCGATGGTTGTTGCAGGTACATGTTTAGCAACTGCTCTGAATAATTTTAAGTTACCCTCAGGCACTACAGCACAAAGACCTGCAAGTCCCTCTGTAGGCATGATAAGATTCAATACAGAAGAACTACAGGTAGAAGTTTGGAACGGTAGTTCATGGACACAAGTAATCAGAGCATCCTCAGGTGGTAACGACGGTGGAACCCCTGCTTCAGCAGCATCTAGTGTTCAAGAACTCATGGACGCAGGTGTTGCTGCAGATGGTAACTATTACTTGAACTTAGATGGTACAACTAGACGCTATTTTGTTCCTGTTAATAGTCATCCTTATTATCTTCTTATAGGTAACTGGGGTGGTGGCGGTGCTGCATTCTTTAGTAATGCATCATCATTGACAGGACAGAACTTGAATGATACGGGAGACTCAACTCCTACGGGTAACTTTGCATCTAACTCTACATGGGGTTATTACAGAAACGTAAGTGGTTCTGATTACAGATATGCAACCTTTAGTAATAGAGGTGTATCATATCGTTATGTGAAGATGAGATTCAATCTCTATAATTATTATTCTAATGATGGTGTTAATGGACGCAACTTCCTAAATATTTCATCAGGAGTTGGTGATGGTATGACCATCATGCGTAACAACTCAGGTGCAGGTGATGGTCAACACATCTTTACATATTATACTGCTATCTCTAACAATGATGGTAACTCATGCCCATCAGTAGCAGGAATGCAACCAACTCACGTTGCAGGTGGTAACAACCCAGGTGGTTTCATGGGTAACAGATATACATGTTTCTCTAGATCTGGATCTAGTTTTACCTCAGAATATGTGAGAAACTTTACAGTACAGCCAGGAGATAACTCTGGTGGTACTGGACCGAATGTATTTAATGGTGATGCATGGTTCACCGTTGATCTTGGCACATCATACTCAGATGATATGCACATTGTTATTCACTCAGACCAAGACAGTGGAAACGAGGATACATACCTTAAGAGAGGTTGTGTACTTGTTCGACCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
559acfb055a43b7c77c99486876b0035f4000bf1f24e3150e89f54c686eb9fbd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5074
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank