Protein

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Genbank accession
UAJ16910.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,68
Protein sequence
MGKLIAADIPNLISGVSQQPWNVRLPTQAEEQVNCYSSVTDFLRRRPATKHIAKLRDTKFTNGCAEHHINRDEQEKYTCLFTSSSIEVFDLQGQKKTVNASVEAMAYLSTVVNPETDLRFLTINDYTFVLNRKKVVEQSSDLSPKRVAEALVFIKQASYNTTYYVTLDGKTVSFTTLDGVAPSDQPADKLSSKEIAESLASQLTTADYSIQSQNNTIWIRKKDGSDFVIKAEDTRSNTHISVFKNKVQRFSDLPTVAPKGFTVEIYGDSSSSFDNYYCQFEPTDSNDTFGAGLWKETVKPGIPFKLDAATMPHALVRNADGTFEFKALDWTERTCGDEDSAAMPSFVGRTINSVFFYRNRLAFLSEENVIMSEVGEFFNFFPTTVTTMVDSDRIDVAASHVRSNTLESAAVFSGGVLMFSDQCQFSLEHDTTLSNSTVSVKPVTEFETSIKVVPVSSGKTVFFATEQGAFGGLREYITLPDASDQNDAADVTAHVPRYIRGHIRSLVCSTNEDVLLVLGEEVRSSIWVYKYFWNGSEKIQSAWCRFDMSGDVLGAFFVKTKCYCIMQYNDGVYLEVMEFTPGHKDENSDFEFCLDRKITESSLGFGDYDAASNTTRITLPYSLPTGTLPVVVTRPTEAGASGSGEVLSVEPDRTNPKVFMVEGDLSAKSLYIGVPYTSSYTFSTFAIRESEKGNAITTGRLQLRSLTLNCSNTGYLKLLVTPAFRKTSTYTFTGRQLGHGANRLGYVSLYTGTVKCPILSLNTQVTVKIESDAFLPFAVVNASWEGFYNTRDQRV
Physico‐chemical
properties
protein length:795 AA
molecular weight: 88296,08770 Da
isoelectric point:5,31663
aromaticity:0,10818
hydropathy:-0,24239

Domains

Domains [InterPro]
IPR058003
TTP
3–795
IPR058003
UAJ16910.1
1 795
Architecture
TTP
TTP 3-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UAJ16910.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9930
Central domain 144 348 206 0,2603
C-terminal 349 795 446 0,3481
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-348
C-terminal
349-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Desulfovibrio phage ProddE
[NCBI] 		2866661 Uroviricota > Caudoviricetes > Autographivirales > Proddevirus > Proddevirus proddE
Host Desulfovibrio desulfuricans
[NCBI] 		876 cellular organisms > Bacteria > Pseudomonadati > Thermodesulfobacteriota > Desulfovibrionia > Desulfovibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UAJ16910.1 [NCBI]
Genbank nucleotide accession
MZ666938 [NCBI]
CDS location
range 28159 -> 30546
strand +
CDS
GTGGGAAAACTCATAGCTGCCGATATTCCCAACCTGATCTCAGGTGTATCCCAGCAGCCTTGGAATGTGCGTCTGCCTACCCAGGCTGAAGAACAGGTGAACTGCTACAGCTCGGTTACTGATTTTCTACGGCGCAGACCCGCCACAAAACACATAGCCAAGCTCAGGGATACGAAGTTTACAAATGGCTGCGCAGAGCACCACATCAACAGGGATGAGCAGGAAAAGTACACCTGCCTGTTCACATCTTCCAGTATTGAGGTTTTTGATCTTCAGGGTCAGAAGAAAACAGTCAATGCTTCGGTAGAAGCAATGGCGTACCTCAGTACCGTAGTGAATCCTGAAACAGACCTGCGCTTCCTGACAATCAACGACTACACCTTTGTTCTCAACCGTAAAAAGGTTGTGGAGCAAAGTTCCGATCTCTCTCCAAAACGTGTAGCTGAAGCCTTGGTTTTCATTAAGCAAGCCAGCTACAATACCACCTATTATGTGACCCTGGACGGAAAGACAGTTTCCTTCACAACGCTTGATGGTGTGGCACCTTCGGACCAACCAGCCGACAAACTATCATCCAAGGAAATTGCTGAAAGTCTGGCTAGTCAGCTTACTACGGCTGATTACTCCATCCAATCACAGAACAATACCATCTGGATTCGTAAAAAAGATGGTTCTGATTTTGTCATAAAAGCAGAGGATACCCGTTCAAACACTCACATCTCTGTGTTCAAGAATAAGGTGCAGAGGTTTTCGGACCTACCTACCGTGGCACCGAAGGGCTTCACCGTTGAAATATACGGGGACTCATCTTCAAGCTTCGACAATTATTATTGTCAGTTTGAACCCACAGATTCTAATGACACGTTTGGGGCTGGGTTGTGGAAGGAAACGGTTAAGCCGGGTATCCCCTTCAAGCTTGATGCTGCCACCATGCCTCATGCTCTTGTACGCAATGCTGATGGTACGTTTGAGTTCAAAGCCCTTGATTGGACGGAACGGACTTGCGGGGATGAAGATTCTGCGGCCATGCCGTCTTTTGTAGGCAGAACCATCAATAGTGTTTTCTTCTATCGGAACAGGCTGGCTTTTCTGTCGGAAGAAAACGTCATCATGAGTGAAGTGGGTGAGTTCTTCAACTTCTTCCCAACCACCGTGACCACGATGGTAGACTCTGACCGAATTGACGTTGCTGCCTCCCATGTTCGCAGTAATACCCTTGAAAGCGCAGCCGTCTTTTCAGGGGGGGTGTTGATGTTCAGTGACCAGTGCCAGTTTAGCCTAGAGCACGACACCACGCTTTCCAATTCTACAGTATCGGTAAAGCCGGTTACAGAATTTGAAACTTCAATCAAGGTGGTACCAGTTTCCTCTGGTAAGACGGTCTTTTTCGCTACAGAGCAGGGAGCCTTTGGCGGGCTGCGTGAATACATAACCTTGCCTGATGCAAGCGATCAGAACGATGCCGCTGATGTCACAGCGCATGTACCCAGATACATTCGAGGGCATATTCGTTCCTTGGTGTGCTCCACTAATGAGGATGTGCTTTTGGTGTTAGGTGAGGAAGTCCGATCTTCTATCTGGGTGTATAAGTATTTCTGGAACGGTAGCGAAAAGATTCAATCGGCGTGGTGTAGGTTTGACATGAGTGGGGATGTACTTGGTGCTTTTTTCGTCAAAACCAAATGCTATTGCATCATGCAGTACAATGACGGGGTGTATCTTGAGGTGATGGAGTTCACCCCCGGCCATAAAGACGAGAACAGTGATTTTGAGTTCTGTCTTGACCGGAAGATCACTGAATCTTCGTTAGGCTTCGGTGATTATGATGCAGCCTCCAACACCACCAGAATAACCTTACCATATTCTTTACCAACCGGGACACTACCTGTGGTTGTAACCCGCCCTACCGAGGCCGGGGCGAGTGGTAGTGGGGAAGTTCTTTCTGTGGAACCAGACCGAACTAACCCTAAGGTTTTTATGGTAGAAGGGGATTTGTCAGCTAAATCGCTGTACATCGGTGTTCCATATACCTCCTCTTATACCTTCAGCACCTTCGCAATCAGGGAATCTGAGAAGGGGAACGCCATCACTACCGGGCGGCTTCAGCTCAGAAGCCTTACCCTGAACTGCTCAAACACTGGCTACCTGAAGCTCCTGGTGACTCCAGCCTTCAGAAAAACCAGCACCTACACATTCACAGGACGGCAGCTAGGGCACGGGGCTAACCGCCTAGGTTATGTCTCCCTCTACACCGGCACCGTAAAATGCCCCATACTTTCCCTGAACACACAGGTGACAGTGAAGATTGAATCCGATGCCTTTCTTCCTTTCGCCGTGGTTAATGCCAGTTGGGAAGGTTTCTACAACACCAGAGACCAGAGGGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9907636c0484b39e2f811a4d874f6eb62347613a3cb73ef2012669f2423c0079
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3124
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A sheep in wolf's clothing: the temperate origins of bacteriophage T7 Boeckman,J.X., Korn,A., Yao,G., Ravindran,A., Gonzalez,C. and Gill,J. 2022-03 — GenBank