Protein

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Genbank accession
YP_010660699.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,69
Protein sequence
MTVSTIGSVAEFDTNGVTTNYPFYFKFLANEDLVVTYVNPAGVSSVLTLGTNYTVNGAGNEQGGSIVTTSALAGPGQLIVSREMDAFQQTSLRNQGKFLAETHEDVFDKLTMLIQQGFSIFKRALTRPFGRDYFYAENRRITDVKDPVEPQDAVTKKWSLVFLGDLVSAIQGPINNALNIFYRAPDLTAHVVQDLSGPDGARLIGDGAGTVKDTLNSLAAEDVALQDNIDAVSLAADTGNFGKNVMFSKVRARIFAGAPFMHVLGDSISHGAFADDWYRNGWVNLFKRMLNVELGTYSYGVTPLLPFTNPVTGASNADIHDVLIGAHWLLYDTIPDVPTGASWITRTTAAQMDITVPTFQDVAVIYYAQNPSGGSFEILINGTPLTTINTSSATRNSFVGYGFALADNGLGSCKITIRTTSAAEVEITGIGYYKTANQAVLQNMSQSGRKLINTSQACVQRLMGESALFVMALGVNDFYDHQNDDVKFAAFTQVIDWLIQYANQYEVPVVVPDFVWYLGPENRTRAQLRRLAKQTKGVYIPFPDFFMKNSIVPNSAYMVETLNLFTNDLHPNVAGHKFIAETIAKKIGLSVSSKKQVLDYHDWWFPLALNPASGVTNKSTSAPQVSAIKNQGGQVLVRLNLTGLAGAVTKGVALGYPSRAGVQFDVPVTTQLTPTNTGVSQGVCIVNAAGVSVLTNAQNATADHQLFLSVPRSVGQ
Physico‐chemical
properties
protein length:716 AA
molecular weight: 77455,69550 Da
isoelectric point:5,80533
aromaticity:0,09777
hydropathy:0,00684

Domains

Domains [InterPro]
DC_0055
ATT
8–284
DC_0055 IPR036514
SSF52266
STR
255–590
SSF52266
SSF52266
STR
263–587
SSF52266
YP_010660699.1
1 716
Architecture
ATT
STR
ATT 8-284 | STR 285-590 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010660699.1
1 716
Domain Start End Length (AA) Confidence
N-terminal 1 240 240 0,9966
Central domain 241 439 200 0,5148
C-terminal 440 716 276 0,7084
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-240
Central
241-439
C-terminal
440-716

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage UFJF_PfDIW6
[NCBI] 		2927622 Uroviricota > Caudoviricetes > Purivirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010660699.1 [NCBI]
Genbank nucleotide accession
NC_070881.1 [NCBI]
CDS location
range 19256 -> 21406
strand +
CDS
GTGACCGTCAGCACAATAGGCAGCGTTGCAGAGTTCGATACCAACGGGGTAACCACCAACTACCCGTTTTATTTCAAGTTCCTGGCCAATGAGGATCTGGTTGTCACCTATGTGAATCCGGCCGGTGTCAGTTCCGTTCTCACGCTCGGCACGAACTACACCGTCAACGGCGCAGGCAATGAGCAGGGCGGGAGCATCGTCACTACGTCGGCGCTCGCCGGCCCTGGGCAGTTGATCGTCTCCAGGGAAATGGATGCCTTCCAACAGACCAGCCTGCGCAATCAGGGGAAGTTCCTGGCGGAAACGCATGAGGATGTATTCGACAAGCTGACCATGTTGATACAGCAGGGTTTCAGCATCTTCAAGCGCGCCCTTACACGCCCATTTGGGCGAGATTATTTCTATGCGGAAAACCGGCGGATCACGGACGTAAAGGATCCAGTTGAGCCACAGGATGCGGTGACCAAAAAATGGTCCTTGGTGTTCCTCGGCGACCTAGTATCTGCCATCCAGGGCCCAATCAATAATGCTCTCAATATCTTCTATCGAGCGCCGGATCTGACGGCGCATGTTGTACAGGATCTTTCCGGGCCTGACGGCGCGAGGTTGATAGGTGATGGGGCCGGGACGGTCAAGGACACATTGAACAGTCTCGCGGCCGAGGATGTGGCTCTACAGGATAATATTGATGCTGTAAGCCTGGCTGCAGATACCGGTAATTTCGGTAAGAACGTTATGTTCTCCAAGGTCAGGGCGCGCATTTTTGCCGGTGCTCCGTTCATGCATGTCCTGGGCGACTCGATATCGCACGGTGCATTCGCTGACGACTGGTATCGCAACGGCTGGGTAAATCTATTCAAGCGAATGCTCAACGTTGAGCTGGGAACCTACAGTTACGGTGTGACGCCGCTATTGCCTTTCACTAACCCAGTGACAGGTGCATCAAATGCGGACATCCATGATGTGCTGATAGGGGCGCACTGGTTGTTGTACGACACAATACCCGACGTGCCTACCGGGGCGTCATGGATTACAAGAACTACTGCTGCACAGATGGATATCACCGTTCCGACGTTTCAAGATGTAGCCGTAATCTATTACGCGCAGAACCCGTCTGGTGGCAGCTTCGAAATCTTGATCAACGGTACGCCGCTGACCACCATTAATACCAGTTCTGCGACTCGTAATTCGTTTGTAGGCTATGGATTTGCTCTTGCGGATAACGGCTTAGGTTCTTGCAAAATTACCATCCGGACAACTTCAGCGGCCGAGGTTGAAATAACCGGTATCGGCTACTACAAAACTGCTAATCAAGCGGTACTGCAGAACATGTCGCAGAGCGGAAGAAAGCTAATCAACACCAGTCAAGCGTGTGTGCAAAGGTTAATGGGCGAATCAGCTCTTTTCGTGATGGCTCTGGGTGTGAATGACTTCTACGATCATCAGAATGATGATGTTAAGTTTGCCGCGTTTACTCAGGTCATTGACTGGCTGATTCAGTATGCCAACCAATACGAAGTCCCGGTGGTTGTTCCCGATTTTGTCTGGTACTTAGGCCCTGAGAATAGAACACGTGCGCAACTTCGGCGCTTGGCTAAGCAGACTAAAGGGGTGTACATCCCTTTTCCTGACTTCTTCATGAAAAACAGCATCGTTCCGAATTCGGCGTATATGGTTGAAACCCTTAACTTATTCACTAACGATCTGCACCCCAACGTCGCTGGTCATAAGTTCATCGCTGAAACGATCGCCAAGAAGATAGGGTTGTCTGTGTCCTCCAAAAAGCAGGTTTTGGACTATCACGACTGGTGGTTTCCCCTAGCACTCAACCCAGCATCGGGTGTCACCAACAAGTCCACTAGCGCTCCACAGGTGTCAGCAATCAAGAATCAAGGCGGCCAGGTTCTAGTGAGGCTCAATCTAACTGGGCTCGCGGGTGCTGTGACAAAAGGTGTTGCTCTCGGGTACCCGTCCAGGGCGGGAGTCCAATTTGATGTACCTGTTACGACTCAGTTGACTCCTACCAACACCGGTGTGAGCCAGGGCGTTTGCATCGTGAACGCAGCCGGCGTATCTGTTCTGACCAACGCACAAAACGCAACTGCAGATCACCAGCTATTCCTGTCGGTTCCTCGATCTGTTGGCCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c860ee3f4697819930e8eb3a9cc24d51d7cf62f88f06876a1426f59312d11016
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7444
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of UFJF_PfDIW6: a novel lytic Pseudomonas fluorescens-phage with potential for biocontrol in the dairy industry Hungaro,H.M., Vidigal,P.M.P., Nascimento,E.C., Oliveira,F.G.C., Gontijo,M.T.P. and Lopez,M.E.S. 2022 — GenBank