Protein

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Genbank accession
WKV23589.1 [GenBank]
Protein name
long-tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MAELKRKFRAQEGLDAAGEKVINVAKADRTVMSDGVNVEYLIQENTLQQYDSTRGYPEHFAVIYDNRIWVSNREIAEPAGDFTELYWNSVRTDAKWKTVSSGTTNLKSGDFISADTAGRTDMKFILPSNPQDGDTIFIKDIGGQPGYASLTVDASIQSILWMGSQIRTAQMTHPYSQMVFVFSNRLWQLYISDNESRATYITPASIHEAQAGENLVRRFTSGAEVFITLPKHANNGDIISVVDLDSLNPLFHTTLKTYDQNTSIGQVGTHEMQFRTSGDGFVVFDSADNLWRVWDGDLRTRLRIVTEDTDVRPNSHIMVFGANNDEIKTVNLNLPESPAIGDTVKISLNYMRKGQTVNINATGTDTIASNIELLQFPKRSDYPPGATWVQSSTLTFNGDESYVPILDLSYIEDENSQYWVVADNTPTVERVDSTNDETRARLGVIALATQEQANKDKEDNPEKELAITPETLANRIATKIRRGIARLATQAELEVKTGGALLDDVIVTPKVLNDRTALEDRQGLAELATQSETNDGVDDSRIVTPKKLHNRKASEILTGILALVKTGISTLAGVDRDTKGSNVYDYTDNEKAVTPASLFENKATYTSQGGSYLATETEVIQGTPHDPKVPTVVTPVELHKKTATETRIGFSEIATQNEVNTGTDDFRYVTPKKLNGRNATEDLTGISRVATDAEFAAGELDNVISTPKKIKNYFSSPDRKSVVTESGLVESGNSWDHYNLDIQKASETQRGTLQLATQVLTDAGVDDTTAVTPKKLQAKKTSETSEGIIQIATQSETTSGTVGNKAVPPKHLKYAIQEQPDWEASPLRRGPVKLTEGALTFVGDKEFGSGVKFDTTTGLYINDNDKLNAGNYFKSGYAISPFEMNKTLQNFLPINATAVNSHKLDNLDSTQFIRRDIDQTVEGSLTLTQQTNTSAPLVSSSTAKFVSMLVTTEATIGDATGHSVINLDAKTNKWVIDGQANSQYLDFTAGTTDVLKLKRDGDVNVAQTLSAGNRVDASKGFSVEGGIMVINPTANNIQIGSQSKATNIQTTDAGNLKVTDTSGSSVILTTKNAVTIVGNNFVNKAGDSMSGRLDISAAMSSVITEAKAIGPLTNETVGNWSAEIITEDIYKTLPGFMVPIYSDDGGGKVIIGYVDYDPADASKRGVRAPGVLSQIGTSKKEFTYQIWNPRPATAYTDAKSSLWIRTYDPVKGAFNEWGRVYTTEAPVTSAEIGAVSTAGSSFNNLTIRDWLQIGNVRITPNPDTQSVDFTWIP
Physico‐chemical
properties
protein length:1273 AA
molecular weight: 138778,77910 Da
isoelectric point:4,99611
aromaticity:0,07148
hydropathy:-0,40621

Domains

Domains [InterPro]
DC_1986
ATT
6–126
DC_1986 DC_1209
IPR048391
ATT
1113–1221
IPR048391
WKV23589.1
1 1273
Architecture
ATT
STR
ATT
STR
ATT 6-126 | STR 342-1112 | ATT 1113-1221 | STR 1222-1258 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKV23589.1
1 1273
Domain Start End Length (AA) Confidence
N-terminal 1 842 842 0,9087
Central domain 843 1041 200 0,2484
C-terminal 1042 1273 231 0,7003
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-842
Central
843-1041
C-terminal
1042-1273

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEA1
[NCBI] 		3061287 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV23589.1 [NCBI]
Genbank nucleotide accession
OQ927978 [NCBI]
CDS location
range 145547 -> 149368
strand +
CDS
ATGGCCGAATTAAAACGTAAGTTCAGAGCGCAAGAAGGTCTGGACGCTGCGGGTGAGAAAGTCATCAATGTTGCCAAGGCAGATCGGACGGTCATGTCTGACGGTGTTAACGTTGAATATCTCATCCAAGAAAACACATTACAACAATATGATAGTACTCGTGGTTATCCAGAGCATTTTGCTGTCATTTATGATAATCGTATTTGGGTGTCTAATAGAGAAATTGCTGAGCCAGCAGGCGATTTTACTGAGCTTTACTGGAATTCTGTGCGCACTGATGCAAAATGGAAAACAGTGTCATCTGGAACCACAAATTTAAAATCAGGTGATTTTATTTCAGCTGACACTGCTGGAAGAACAGATATGAAATTCATTCTTCCTAGCAATCCGCAGGATGGCGATACCATTTTTATTAAAGATATCGGTGGTCAGCCAGGATATGCTTCTCTTACTGTCGATGCATCTATTCAATCCATATTATGGATGGGTTCTCAAATAAGAACCGCTCAAATGACGCATCCATACTCACAGATGGTTTTCGTTTTCAGTAATCGTTTGTGGCAACTTTATATAAGTGATAACGAATCAAGAGCCACTTATATAACTCCAGCTAGTATTCATGAAGCGCAAGCAGGCGAAAATCTAGTTAGAAGATTTACTTCTGGCGCAGAAGTTTTTATTACTCTTCCTAAACATGCTAACAACGGTGATATAATTTCCGTAGTTGATTTAGATTCTCTTAACCCGTTGTTTCATACTACATTAAAAACTTATGACCAAAATACTAGTATAGGCCAAGTTGGAACTCATGAGATGCAGTTCCGTACTTCTGGAGATGGATTTGTAGTATTTGATTCAGCTGATAATTTATGGAGAGTATGGGACGGTGATTTACGTACCCGCTTGCGTATTGTAACTGAAGATACTGACGTTAGACCAAATTCTCATATCATGGTTTTTGGGGCTAACAATGACGAAATAAAGACAGTTAATCTAAACTTGCCCGAATCTCCAGCTATTGGAGACACAGTAAAAATTTCTCTTAACTATATGAGAAAAGGGCAAACAGTTAATATAAACGCTACTGGAACTGACACAATAGCTTCAAATATTGAACTTTTGCAATTTCCAAAACGCTCTGATTATCCGCCTGGAGCTACTTGGGTTCAAAGCAGTACTTTAACGTTCAATGGTGATGAATCTTATGTTCCAATTTTAGATTTATCTTATATAGAAGATGAAAACTCTCAATATTGGGTAGTTGCTGATAATACTCCGACTGTTGAAAGAGTCGATTCGACTAATGATGAGACCCGAGCTCGTTTAGGTGTTATTGCTTTGGCAACCCAAGAGCAAGCTAATAAAGATAAAGAAGATAATCCAGAAAAAGAATTAGCGATTACTCCAGAAACTTTGGCTAACCGTATTGCTACTAAAATCCGTCGCGGTATTGCTCGTTTAGCTACTCAAGCTGAATTAGAAGTTAAAACTGGCGGGGCTTTATTAGATGATGTGATTGTTACTCCGAAAGTTCTGAATGACCGTACCGCTTTAGAAGACCGTCAAGGCCTCGCTGAATTAGCAACTCAATCAGAAACTAACGATGGTGTTGATGATTCTAGAATTGTAACTCCGAAAAAGTTGCATAACCGCAAAGCTTCAGAAATATTAACCGGTATTTTGGCGTTAGTTAAAACTGGAATTTCAACTCTTGCAGGTGTAGATAGAGATACAAAAGGAAGTAACGTATATGACTATACTGATAATGAAAAAGCTGTAACTCCGGCTTCTTTATTTGAAAACAAAGCTACATATACATCACAGGGTGGTTCATACTTAGCTACAGAAACCGAAGTTATTCAGGGTACTCCACATGACCCTAAAGTACCTACGGTAGTAACTCCAGTCGAATTGCATAAGAAAACTGCTACTGAAACACGTATTGGTTTTAGTGAAATTGCTACACAAAACGAAGTCAATACTGGGACAGATGATTTCCGTTATGTTACTCCTAAGAAATTAAATGGCCGTAATGCTACGGAAGATTTAACTGGTATTTCGCGAGTCGCGACAGACGCTGAATTCGCTGCTGGGGAGCTAGATAATGTTATTTCTACTCCTAAAAAGATTAAGAATTACTTTTCTTCCCCTGACCGTAAATCTGTTGTTACTGAATCTGGATTAGTTGAATCAGGTAACTCCTGGGACCATTATAACCTTGATATTCAAAAAGCATCTGAGACGCAACGCGGCACATTACAATTGGCCACACAAGTTCTCACTGACGCTGGGGTTGATGACACGACTGCTGTAACTCCGAAAAAGTTACAAGCTAAAAAGACATCTGAAACTTCTGAAGGCATTATTCAGATAGCGACTCAGTCAGAAACAACAAGTGGTACTGTAGGAAATAAAGCTGTTCCTCCGAAGCATCTAAAATATGCTATCCAAGAACAACCTGATTGGGAAGCTTCTCCTCTTCGTAGAGGCCCAGTTAAATTAACAGAAGGCGCTTTAACATTTGTTGGTGATAAAGAATTTGGTTCTGGTGTCAAATTTGACACTACAACTGGTCTTTATATTAATGATAATGATAAGTTAAATGCCGGAAATTATTTCAAATCTGGATATGCTATATCTCCTTTTGAAATGAACAAGACTCTTCAAAACTTTTTGCCAATAAACGCAACTGCTGTTAATTCGCATAAGTTAGATAATCTTGATTCAACTCAGTTCATCAGAAGAGATATTGACCAAACGGTCGAAGGTTCGTTAACGTTAACGCAACAAACGAACACTAGTGCTCCTCTAGTATCCTCTAGTACTGCGAAGTTTGTTAGTATGTTGGTTACTACAGAAGCTACTATCGGGGACGCTACGGGTCACTCTGTGATTAATTTGGACGCTAAAACCAATAAATGGGTTATTGACGGACAAGCTAATTCTCAGTATTTAGATTTTACTGCTGGAACTACAGATGTTCTTAAGCTCAAACGAGATGGAGACGTTAACGTAGCCCAAACATTATCGGCTGGTAATAGAGTAGATGCTTCAAAAGGCTTTAGCGTCGAAGGTGGTATAATGGTTATTAATCCTACCGCCAACAATATTCAAATTGGTTCGCAATCTAAAGCTACTAATATCCAAACAACAGACGCCGGAAACTTGAAAGTTACTGATACATCAGGCTCTTCTGTGATATTGACCACTAAAAACGCTGTTACTATCGTAGGTAATAACTTCGTTAATAAAGCTGGCGATTCAATGTCTGGCCGTTTAGATATTTCTGCTGCAATGAGTTCAGTAATTACTGAAGCTAAAGCGATAGGTCCTCTTACTAACGAAACTGTGGGTAATTGGTCAGCAGAAATCATAACTGAAGATATCTACAAAACATTGCCTGGATTTATGGTTCCAATTTATTCTGACGATGGCGGTGGTAAAGTAATTATAGGTTATGTAGATTATGACCCGGCTGATGCATCAAAACGCGGTGTAAGAGCTCCGGGTGTATTATCTCAGATTGGAACGAGTAAAAAGGAATTCACATATCAAATATGGAACCCTCGTCCAGCTACAGCTTATACAGATGCTAAATCTTCTCTTTGGATTAGAACCTATGACCCAGTTAAAGGTGCATTCAATGAATGGGGAAGAGTTTACACTACTGAAGCTCCTGTTACGTCTGCTGAAATTGGTGCCGTTTCTACAGCTGGTTCTTCATTTAATAACTTAACAATCAGAGACTGGTTACAGATTGGTAATGTTCGCATTACGCCTAATCCTGATACCCAATCTGTTGATTTTACTTGGATACCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
de20073c15e6fb2bc63965f7b4e82d9abbba22a0aa7eb1e89bc358ad194184aa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5592
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification and characterization of lytic, wide host range bacteriophages from waste effluents against Salmonella enterica serovars Akhtar,M., Viazis,S. and Diez-Gonzalez,F. 2014 — GenBank
Accurate and sensitive detection of Salmonella in foods by engineered bacteriophages Nguyen,M.M., Gil,J., Brown,M., Cesar Tondo,E., Soraya Martins de Aquino,N., Eisenberg,M. and Erickson,S. 2020 — GenBank