Protein

View in Explore
Genbank accession
UYD59312.1 [GenBank]
Protein name
baseplate protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSIQKPKELIDTGIRGQEGTGDTLFDGGEKLNSDLNSMWNVFGDYRIGKTSGFGNRVQTLHGTGYYQKHTRAYYAGSEQPSGNPVDFGSMHDISVTRDGAGDITINLPAGSGHAGECIEFVNTDGSVGFGTGREVIIKTTGTGDSIGSLGNRIVINRTNFRIRLWVTEGSPAGSKWNYKLDSMFGDSATSYAANILNIAAGAQRNVVLFNKAQYNVVKHMLFVTQRGASVHQEACETLLMVNNTSNTDTNVYSTEYARIRTRTPSKPEDNLLFDATYSITGSSVILTVTNISQTAIDVYVKSIDAIGA
Physico‐chemical
properties
protein length:308 AA
molecular weight: 33266,61800 Da
isoelectric point:6,07736
aromaticity:0,08442
hydropathy:-0,31266

Domains

Domains [InterPro]
IPR036240
STR
1–306
IPR036240
IPR008987
ATT
7–184
IPR008987 IPR027412
G3DSA:1.20.5.960
Unmapped
18–49
G3DSA:1.20.5.960 IPR027411
UYD59312.1
1 308
Architecture
ATT
STR
ATT 1-184 | STR 185-306 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD59312.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 101 101 0,7415
Central domain 102 297 197 0,0052
C-terminal 298 308 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-101
Central
102-297
C-terminal
298-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage avDM6
[NCBI] 		3101602 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD59312.1 [NCBI]
Genbank nucleotide accession
OP380601 [NCBI]
CDS location
range 95151 -> 96077
strand +
CDS
ATGTCGATTCAAAAACCAAAAGAGTTAATCGATACTGGTATACGTGGTCAAGAGGGAACCGGTGATACACTATTTGATGGTGGTGAAAAATTAAACTCAGATTTAAATAGTATGTGGAACGTGTTCGGTGATTACCGAATTGGTAAAACTTCTGGATTCGGAAACCGAGTACAAACTTTACACGGGACTGGATATTACCAGAAACATACTAGAGCTTATTACGCCGGTTCTGAACAGCCTTCTGGAAACCCTGTAGATTTTGGGTCCATGCATGATATATCAGTTACAAGAGATGGGGCGGGGGATATTACAATAAACCTACCCGCTGGAAGTGGTCATGCAGGTGAATGTATTGAGTTCGTGAATACTGATGGTTCTGTAGGGTTTGGTACTGGTCGTGAGGTAATTATTAAAACTACTGGAACTGGCGATTCTATTGGATCACTTGGTAACCGAATTGTTATTAATAGAACCAACTTTAGAATTCGGTTGTGGGTTACAGAAGGTAGTCCGGCTGGGTCTAAATGGAATTATAAACTGGATTCGATGTTCGGTGATAGCGCAACGTCCTATGCCGCCAACATTCTTAATATCGCGGCGGGCGCTCAACGTAACGTGGTTCTTTTTAACAAAGCACAATACAACGTAGTCAAACATATGCTATTTGTTACTCAACGTGGTGCTTCTGTTCATCAAGAAGCATGTGAAACTTTGTTGATGGTAAATAATACCAGTAATACAGACACTAATGTATATTCAACTGAATATGCACGTATACGAACTAGAACTCCATCAAAGCCAGAAGATAATCTTCTATTTGATGCAACTTACAGTATAACTGGAAGTTCTGTTATTTTGACAGTAACTAATATCAGTCAAACAGCAATAGATGTATACGTTAAATCTATTGATGCAATCGGGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e76c7b18525764bdbd8643486a392e294224e35cee1b4554f0ac62c65de1a323
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7441
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
On Diversity and Genetic Richness: Insights on Aeromonad Phage Diversity through Physicochemical and Molecular Analysis Papa,D.M., Rousseau,G., Tremblay,D., Labrie,S., Gutierrez,T.A., Ramos,J.D. and Moineau,S. 2024-03-24 — GenBank