Protein

View in Explore
Genbank accession
QYW01757.1 [GenBank]
Protein name
tail knob protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKTVGSLPSLIQGVSEQEPHNRAPGKMWESVNMMDSPTRGKVRRRGTVMSDHKPLASSVAQAMQEAGRMQEYTFIIDGREFSLTYRQRASDTSKDYFAQLLAKDSGEFYDIVYEESTWVDNLIKGGVSAIACVGRYVYLAGNSTLPRATSTEVWNSPVNLQKLSGWIREGAYSRKFTARLTLTDGTVKDYSYTTKPAAYPELLDTSDIPFYKPGNADPKEPDPEYQKKVNDRVNAYEGNKTAWIKEAAEDIVPANIARKIAELIVADGHFASSIESCVVVDDPAFNDIRMLDDGAGTLVSYAGKEVSDPQFVTLYHWAGKVVRVRPSGGGDKESYYLKAVPLDGATGWAKVEWVETAGVVHEIHNVVSQMIVDVANKKAYVAQDGPGLKTLAPHMGDHPLYKSNAVGDAVTAPLPHYFGRPITCMTVFQDRLMLSADNIVNFSRSSDYLNFFRQTVLNMQENDPIEIFAHGSEGDTIKKAVMFERDLVLFGELRQYAISGREFLSPTNPNINVIGAFEGGATTSPIVSGNFLFFGKHANERTGLHQMQPGDTPQTTVVYEVTQELDTWLKGDPVQLLGMTQPDMVTYRTDADSSIWYTYRYSDDRSVGRIMASWGKQQYADELGAVASITHYRGDLFIVTLRSAGGKDYWFADRLSLNADLSTRPHLDSQVAYGSETEWHKAVQEKLFVAATNASSYFLMGAPRTQAEDFIEQAPGVEPHLVVGSVSPAYFQLTNPYMRDSQGQPILNGRLTLTSYGFHLSDTGGLSAFVLAPTKDRTLLFEGRVLGHTSNIIGRQPVFSGMRTVSVGKETRACIVELRSEDWQPLRVTGAEWSGQTFMPRARGLY
Physico‐chemical
properties
protein length:847 AA
molecular weight: 93812,46670 Da
isoelectric point:5,66545
aromaticity:0,10035
hydropathy:-0,33920

Domains

Domains [InterPro]
DC_0058
STR
1–847
DC_0058
IPR058003
TTP
235–844
IPR058003
QYW01757.1
1 847
Architecture
STR
STR 1-847
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW01757.1
1 847
Domain Start End Length (AA) Confidence
N-terminal 1 191 191 0,9009
Central domain 192 400 210 0,3069
C-terminal 401 847 446 0,4207
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-191
Central
192-400
C-terminal
401-847

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Ptah
[NCBI] 		2859657 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Ponderosavirus
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW01757.1 [NCBI]
Genbank nucleotide accession
MZ326854 [NCBI]
CDS location
range 25152 -> 27695
strand +
CDS
ATGGCTAAGACCGTTGGCAGCTTGCCATCACTGATTCAAGGCGTATCCGAACAGGAGCCGCACAACCGCGCTCCCGGTAAGATGTGGGAGAGCGTCAACATGATGGACTCTCCGACGCGTGGCAAGGTTCGCCGTCGCGGTACCGTCATGTCCGACCACAAGCCGCTCGCCTCCTCGGTTGCTCAGGCAATGCAGGAGGCAGGGCGCATGCAGGAGTACACCTTCATCATCGACGGACGGGAGTTCAGCCTCACGTACCGTCAGCGCGCCAGTGACACCAGCAAGGATTACTTCGCGCAGCTGCTCGCCAAGGATAGCGGTGAGTTCTACGACATCGTTTACGAGGAGAGCACATGGGTAGACAACCTGATCAAGGGCGGTGTGTCCGCTATCGCGTGTGTGGGCCGGTACGTGTACCTCGCGGGGAACTCCACCCTGCCGCGCGCGACTTCTACCGAAGTATGGAACTCACCCGTCAACTTGCAGAAGCTGTCGGGCTGGATTCGAGAGGGCGCGTACAGTCGGAAGTTCACCGCACGCCTGACGCTCACTGACGGCACGGTCAAGGACTACAGCTACACGACCAAGCCCGCAGCGTACCCGGAACTGCTGGACACCAGCGACATCCCGTTCTACAAGCCGGGCAACGCTGACCCGAAGGAACCGGACCCGGAGTACCAGAAGAAGGTCAACGACCGAGTGAACGCCTACGAGGGCAACAAGACGGCGTGGATCAAGGAAGCTGCCGAGGACATCGTACCTGCGAACATCGCCCGCAAGATCGCGGAGTTGATCGTGGCTGATGGGCACTTCGCATCGTCCATTGAATCCTGCGTGGTTGTTGACGACCCGGCGTTCAACGACATCCGAATGCTGGACGACGGCGCTGGTACGCTGGTGTCGTACGCCGGTAAGGAAGTCAGCGATCCGCAGTTCGTCACCCTGTACCATTGGGCAGGCAAGGTCGTGCGAGTCCGCCCGAGCGGCGGCGGCGACAAGGAGAGCTACTACCTCAAGGCCGTACCGCTGGACGGTGCAACTGGCTGGGCAAAGGTAGAGTGGGTGGAGACGGCTGGAGTCGTCCACGAGATTCACAACGTGGTCTCGCAGATGATCGTTGACGTGGCGAACAAGAAAGCGTACGTTGCTCAGGACGGGCCGGGCCTCAAGACTCTGGCTCCGCACATGGGTGATCATCCGCTGTACAAGTCCAACGCTGTCGGCGACGCCGTGACTGCTCCGCTGCCGCACTACTTCGGTCGGCCGATCACCTGCATGACGGTGTTCCAAGACCGGCTGATGCTTAGCGCGGACAACATCGTGAACTTCTCGCGCTCCTCGGACTACCTGAACTTCTTCCGACAGACCGTGCTGAACATGCAGGAGAACGACCCCATCGAGATTTTCGCCCACGGCTCCGAAGGTGACACGATCAAGAAGGCGGTGATGTTCGAGCGGGACCTCGTGCTGTTCGGCGAGTTGCGCCAGTACGCGATCAGCGGTCGTGAGTTCCTGTCCCCGACGAATCCGAACATCAACGTGATCGGTGCGTTCGAGGGCGGTGCGACGACGAGCCCGATTGTCTCGGGTAACTTCCTGTTCTTCGGGAAGCACGCGAACGAGCGCACGGGCCTGCACCAGATGCAGCCGGGCGACACGCCGCAGACCACCGTGGTGTACGAGGTGACGCAGGAACTGGACACTTGGCTCAAGGGTGACCCGGTGCAGCTGCTGGGCATGACTCAGCCGGACATGGTGACGTACCGCACTGATGCCGACAGTTCGATTTGGTACACGTACAGGTACAGTGATGATCGCTCCGTTGGCCGTATCATGGCGAGCTGGGGCAAGCAGCAGTACGCCGACGAACTCGGTGCTGTTGCCTCCATCACGCACTACCGTGGCGACCTGTTCATTGTTACCCTGCGCTCCGCAGGTGGCAAGGACTACTGGTTCGCTGACCGGCTTAGCCTCAACGCCGACCTGAGTACGCGTCCGCATCTGGACTCGCAGGTTGCGTATGGTAGCGAGACGGAGTGGCACAAGGCCGTGCAAGAGAAGCTGTTCGTGGCAGCAACGAACGCGTCGTCGTACTTCCTGATGGGCGCACCGCGCACTCAGGCGGAGGACTTCATCGAGCAGGCTCCGGGAGTTGAACCCCATTTGGTTGTAGGCAGTGTCTCGCCTGCGTACTTCCAGCTGACGAATCCCTACATGCGCGATTCGCAGGGTCAGCCCATCCTCAATGGGCGACTGACTCTTACCTCGTATGGTTTCCATCTGTCGGACACTGGTGGCCTCTCGGCCTTCGTGTTGGCTCCGACTAAGGACCGTACCCTGCTGTTTGAGGGCCGCGTGCTGGGGCATACCAGCAACATCATCGGGCGTCAGCCGGTATTCTCCGGCATGCGTACCGTAAGCGTAGGCAAGGAAACCCGAGCCTGCATCGTTGAACTGCGGTCTGAGGACTGGCAGCCGCTTCGCGTCACTGGCGCTGAGTGGTCCGGCCAGACCTTCATGCCGCGCGCACGAGGACTGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
43a0ddf712d2ed2c3d7f617a53c84b1a27a277ace8d5cd97aeff1584612e4590
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3105
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Stenotrophomonas maltophilia phage Ptah Berg,A., Tate,N., Clark,J., Le,T., Liu,M. and Burrowes,B. 2022-04-21 — GenBank