Protein

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Genbank accession
GENB_c6b09b086cc2 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTTYATSNPLGSKDPRDLYDNAENFDAAMNDRVNTTWNDRFGVSRPTMKGYEEQFNGWLDAQGFEPGVLEYVDGSPLTVDRPTQLIQRDGNLYSVKRPASFPVNLTGNWATDQSLLVIQVDQGFPQEIGRGVRRVDSVADLRAIAGRFAGDAALVVGYYAETPGVGGGEFHWDSTSIEDDNGGSIIQATGITTGRWKRDITHGVWAEWFGARNDGTDAAGTTAAVWAAIIALRHDPETIVQYIGGPTVTAYASGRLNFGNGVFALQPDSFDITQDLGLTIVGQGFRGKNQAMKAATTLVVRGTSSGFFFRHYGNGGRNLTFNNIDVVYDDSQFSGDIIETTSSPGLTLQRVRVGCYGGFLASRLTTARSCIRATFDEFIRCEDVVLDGAQYGFYSDGTINVPGLSFGGWGVTFLNCTFYDFAKSMVLHAGNRTRHSLNIIASYFNPINTSPERCHDIDNVEGLIIDGCQHTPSTGSQPSQEWFRVIGSTGRISCNAFAGLSSKLGTIGGANPSAVEWSNNRVSCQGGLTITGGVVRGGGNEYSNADHSVDVAPVAIVSLDIGPDIHKAGVTGYSYRISADSSMLSGRVNYSFEQDNSNSKYYSASTRVGMSNCDSRFITLATAGTKLSPYNAGRTYNVTVAGTQTLPTPIPGAAPIRILKSGANALTIATTSGTNFLIGASGSRTSAVATSTEVGSLIEFEPLTSTAWVGRVLSGTWSFT
Physico‐chemical
properties
protein length:720 AA
molecular weight: 76942,38700 Da
isoelectric point:5,33266
aromaticity:0,09861
hydropathy:-0,18875

Domains

Domains [InterPro]
DC_1559
ATT
1–174
DC_1559 DC_0743
IPR059934
RBD
134–200
IPR059934
GENB_c6b09b086cc2
1 720
Architecture
ATT
RBD
STR
ATT 1-174 | RBD 175-200 | STR 201-720
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_c6b09b086cc2
1 720
Domain Start End Length (AA) Confidence
N-terminal 1 220 220 0,9939
Central domain 221 594 375 0,9929
C-terminal 595 720 125 0,9332
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-220
Central
221-594
C-terminal
595-720

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage JBD94b
[NCBI] 		1542119 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
KM389463.1_CDS_[complement(3215..5377)] [NCBI]
Genbank nucleotide accession
KM389463.1 [NCBI]
CDS location
range 3215 -> 5377
strand -
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
0f9e79d8421d3c8591a08d0b2b855b7a3baee82a00528d2c1d7e2b96283dfc67

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,8157
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50