Protein

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Genbank accession
XWX33698.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MYGTLYDDLFTSRYADNSLIEPRIQRAPNMLFKHQGEFDMYGEPDNHITMFYLSSDGTFRRSTLNKEEQFRTTVEQDNKGNYRVQYQADSVIIDEGQDYVEFGIDTERQEFYVKNLDHSFRFNDDGILVDGKPLLANIDDGINDAFEKLDKLEKSMDRINDIIQDLGDRNLRELINATNKAISDVSDLTNALATTNKNVSDNKIKIDNSIIKYDKFMQDIGDYQITNNEIVNSHTTSINKINNTELPSIKLDISNIKNKIKSQYVIGDDSPTSNFTTRFQNILNEIRDNGGGTLYVLPGTYEIKSRIKIYDNTTIIMTNQTKLLRCHNGGFFDNGDLNNNVGGYDGVSNITIIGGILDNNYENIDKYPTKQINMIALRHAKNITIKDLTFRNGITVHCVDMNGSKDVMFDGCRFEGYVNLNNASYKEALQISEYVTGGIDGGIFDGTPCKNITVKNCTFSSSDILGGYDVCIGNHITANNVFNSNIKIYNNTFKDCNIAIRDWKWNDLDIHGNTFINNKECLRASSIGSSYESAKNIDGTPSNQSQATRNLIFNENKIYNFTSVGIGIYGIQDNDTAFIENVKIKDNYIKGTGQGIISSLVKDIVIEGNDIEDTYRAIKYSATKNIRVLNNTISNSKTEAIYGDVSNYGDIHSINYNSIIKHNIIDNTQKNGVFISTGDIINITDNVITNSNMINEENNKRGSIKVDYSDKCIINNNSLYGQTESFAIQATTSTNVISNNNNTNIQE
Physico‐chemical
properties
protein length:747 AA
molecular weight: 84041,26480 Da
isoelectric point:4,96644
aromaticity:0,08701
hydropathy:-0,54297

Domains

Domains [InterPro]
DC_1272
STR
43–290
DC_1272 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
Coil
Unmapped
142–169
Coil IPR012334
IPR012334
STR
270–602
IPR012334
IPR011050
STR
272–573
IPR011050
IPR039448
ENZ
549–691
IPR039448
IPR011050
STR
549–742
IPR011050
XWX33698.1
1 747
Architecture
STR
STR 43-742 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX33698.1
1 747
Domain Start End Length (AA) Confidence
N-terminal 1 274 274 0,9931
Central domain 275 736 463 0,9966
C-terminal 737 747 10 0,2816
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-274
Central
275-736
C-terminal
737-747

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_41
[NCBI] 		2815628 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX33698.1 [NCBI]
Genbank nucleotide accession
MZ417334.1 [NCBI]
CDS location
range 142761 -> 145004
strand -
CDS
ATGTATGGAACTCTTTATGACGACCTATTTACGAGCCGTTACGCCGATAACTCACTAATAGAGCCGAGGATACAAAGAGCACCTAACATGTTATTTAAACACCAAGGAGAATTTGACATGTATGGTGAGCCGGATAATCATATTACAATGTTTTATTTGAGTTCCGATGGTACATTTAGACGTTCTACATTAAATAAAGAAGAGCAATTTAGAACAACGGTAGAGCAAGACAATAAAGGTAACTATAGAGTACAATATCAAGCAGATAGTGTTATTATAGATGAGGGTCAAGATTACGTAGAGTTTGGTATAGATACGGAAAGACAAGAGTTCTATGTTAAAAACTTAGACCACTCATTTAGGTTTAATGATGACGGTATATTGGTAGACGGTAAACCTTTATTAGCTAATATTGATGACGGTATTAATGATGCATTTGAGAAACTAGATAAGTTAGAAAAATCTATGGATAGAATAAATGACATTATCCAAGATTTAGGTGATAGAAATTTAAGGGAACTTATTAATGCAACAAATAAAGCTATTAGTGATGTTAGTGACTTAACTAATGCCTTAGCTACAACTAATAAAAATGTTTCAGATAATAAAATTAAAATAGACAATTCTATAATCAAGTATGATAAGTTCATGCAAGATATAGGTGATTATCAAATTACTAATAATGAGATTGTTAATAGTCATACTACTAGTATAAATAAGATAAATAATACGGAATTACCTAGTATAAAATTGGATATAAGTAATATAAAAAATAAAATTAAATCTCAATATGTTATAGGTGACGATAGTCCTACTAGTAATTTCACAACAAGATTTCAAAATATATTGAATGAAATTAGAGATAACGGTGGAGGTACATTATATGTGTTACCAGGAACTTATGAAATTAAAAGTAGAATTAAGATATATGATAACACTACAATAATAATGACTAATCAAACAAAATTACTAAGATGTCATAATGGTGGTTTCTTTGATAATGGAGACCTCAATAATAATGTAGGTGGTTATGATGGTGTGTCTAACATTACTATTATAGGTGGCATATTAGATAATAATTATGAAAATATAGACAAATATCCTACTAAACAAATAAATATGATAGCTCTAAGACATGCTAAAAATATAACAATTAAAGACTTGACATTCAGAAATGGTATAACGGTTCATTGTGTAGATATGAATGGTAGTAAAGATGTTATGTTTGATGGGTGTAGGTTTGAGGGTTATGTTAATCTTAATAATGCATCATATAAAGAGGCTTTACAAATATCTGAATATGTTACTGGGGGTATAGATGGTGGAATATTTGATGGTACACCATGTAAGAACATAACTGTTAAGAATTGTACATTTAGTAGTTCTGATATTTTAGGTGGGTATGATGTATGTATAGGTAACCATATAACAGCTAATAATGTGTTTAATAGTAACATTAAAATATATAATAATACTTTTAAAGATTGTAATATTGCTATACGAGATTGGAAGTGGAATGACTTAGATATTCATGGTAATACTTTTATTAACAACAAAGAATGTCTAAGAGCATCGTCTATAGGTAGTAGTTATGAAAGTGCTAAAAATATAGACGGAACACCAAGTAACCAATCTCAAGCTACTAGAAATTTAATATTTAATGAAAATAAGATATATAATTTTACTAGCGTAGGTATAGGTATATATGGTATACAAGATAATGATACAGCTTTTATAGAAAATGTCAAGATAAAAGATAATTATATTAAAGGTACAGGTCAAGGTATTATAAGTAGTTTAGTTAAAGATATAGTTATAGAAGGTAATGACATAGAGGACACTTATAGAGCTATTAAATATAGTGCAACTAAGAATATTAGAGTACTAAATAATACAATAAGTAATTCTAAGACTGAAGCTATATATGGAGATGTATCAAATTATGGAGATATACACTCTATAAATTATAATTCTATTATAAAACATAATATTATAGATAATACACAAAAAAATGGTGTATTTATTTCTACAGGAGATATTATTAATATTACAGATAATGTAATAACTAACTCTAATATGATTAATGAGGAAAACAATAAGAGGGGAAGTATTAAAGTAGATTATAGTGATAAGTGCATTATAAATAATAACTCTCTATATGGTCAAACAGAAAGTTTTGCTATACAAGCAACAACAAGCACTAATGTAATCTCAAATAATAATAATACAAACATACAAGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8662510cceefaaea76cd526a02e8b4adc97b37167b92ec6037dfc504cdb627d8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8980
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank