Protein

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Genbank accession
YAA51003.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MGLETTTYIDGLVPTNPLGNDPKSQGDDHIRLIKSALKNTFPNITGAVTVTQAQINAIGTPGVINFSGMVVGFTGTQAQIPSGWQLCNGVGSTALGPVPDLRQRFVIGSTGDEGALVTGSTGGASTHTHTVTVNDHVLTINQIPAHTHIQRYRGAQSLVANSGANGSLDSSAGSYTTSFSTESTGGGQAHNHTATSGSSSNLPPYYALAFIIKL
Physico‐chemical
properties
protein length:214 AA
molecular weight: 21962,05810 Da
isoelectric point:6,41635
aromaticity:0,05607
hydropathy:-0,11963

Domains

Domains [InterPro]
DC_2164
STR
2–214
DC_2164
cd22641
STR
42–214
cd22641
SSF88874
STR
66–214
SSF88874
YAA51003.1
1 214
Architecture
STR
STR 2-214
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA51003.1
1 214
Domain Start End Length (AA) Confidence
N-terminal 1 54 54 0,9854
Central domain 55 203 150 0,0012
C-terminal 204 214 10 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-54
Central
55-203
C-terminal
204-214

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VpT
[NCBI] 		3447162 Viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA51003.1 [NCBI]
Genbank nucleotide accession
PV847829.1 [NCBI]
CDS location
range 29339 -> 29983
strand +
CDS
ATGGGTCTTGAAACTACAACTTATATTGATGGCCTAGTGCCTACCAACCCGCTTGGTAACGACCCTAAGTCTCAAGGTGATGATCACATTAGGTTGATCAAGAGTGCCCTGAAGAATACCTTTCCGAATATCACTGGTGCTGTAACTGTAACTCAAGCCCAGATCAATGCTATCGGAACCCCAGGGGTGATTAACTTCTCTGGTATGGTCGTAGGGTTTACAGGCACTCAGGCTCAAATCCCATCGGGATGGCAGTTGTGTAATGGTGTTGGCTCTACAGCCCTTGGCCCGGTCCCTGATCTACGCCAAAGGTTTGTCATTGGGTCTACTGGTGACGAGGGTGCTCTGGTAACTGGATCGACTGGTGGAGCTTCTACTCACACCCATACCGTTACGGTAAACGATCACGTTCTTACCATCAACCAAATCCCTGCTCACACCCACATACAAAGGTACAGGGGTGCTCAGTCTCTAGTAGCCAACAGCGGAGCTAACGGTAGCCTTGATAGTTCTGCTGGATCGTATACCACCAGCTTCTCAACTGAGTCTACTGGTGGTGGCCAAGCGCACAACCACACTGCAACATCTGGTAGCTCGTCTAACTTGCCACCGTATTACGCTCTAGCTTTTATCATCAAACTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f64166dd16e028459c6c45a85dc2c1a679c47db0268ef310578f497b580e0867
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8160
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50