Protein

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Genbank accession
GENB_6f12216ce2f0 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MQPSYIGDINEVIYGDTTGTTASGVRVIAMTRTSTKNGNGIVVYYSTDGKVWNTNWFYLNSPNLTSIAFLENVGTNGTLVAISQSSTSAIFMWRSTDLGATWTTKTVTHGIAGTVGNTNQLVADNKRNRLMIGSSSTYSTTTAKNIVLQSFDAGDTWSVAYTATNANTRVILSSQKLGRHGIVGRIFSSAPGGSGDSGIIATNETDDTVTFYPLPSNTPIPYTNNRTWTGTYNPQTDTYAFRSTTNNSLHEFDGAFTTFTDRPLGFTFNSGETFGSIIYYPPSNDTVLITINSSGGVIGTNTSRIFKSKTGTGGWTLDDSTNYEQSGVQFANNCVMYDNQLGIISGYIQSSVFRGAGIGYIGTPTQMPTPTPSATATMSATPRNNTNAMMAYGRIGQANGIAQTGYTLFDNDGNNVLTINVELPVNDFIINSFHVEGTNELIVFGQYGSINGIVPTVSVNRIDRVGTLNPTWSVTGIGVSRNISSMVKISENEYYIGVNGGRVYKMNGNGVVDTAWGTTIGTHSTPYILIDNQNSNKMYIASSSRIIKVDIPSGTIDSSFATVTVNGTTSIRQQSDGSLLAFGQFNTIGGVSKSYFARVSTTGVVDPTFTIITTTGSGINVPLNNLEVLPDDSFIVAGFQVNIDGQTGYSYLNKFKSNGRLDPSFNQPIIGSLYGIKVLNDGRILVGATGTIRVNEVSRNGIVRLNYDGTLDTTFNGSVTTNAVFGVGEYSAPLVSLTPTQTPSVTPTHTPVPSAIYDTPLAFRIAQYQQ
Physico‐chemical
properties
protein length:770 AA
molecular weight: 82330,47130 Da
isoelectric point:5,76242
aromaticity:0,09610
hydropathy:-0,14740

Domains

Domains [InterPro]
cd15482
ENZ
8–162
cd15482 SSF101898
G3DSA:2.120.10.10
STR
15–206
G3DSA:2.120.10.10 IPR013431 G3DSA:2.80.10.50
IPR036278
STR
23–164
IPR036278 G3DSA:2.80.10.50
IPR036278
STR
23–165
IPR036278 IPR013431
GENB_6f12216ce2f0
1 770
Architecture
STR
RBD
STR
STR 8-206 | RBD 492-609 | STR 610-724 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_6f12216ce2f0
1 770
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0418
Central domain 11 759 750 0,8790
C-terminal 760 770 10 0,2818
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-759
C-terminal
760-770

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage CM1
[NCBI] 		2998841 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
OP883945.1_CDS_[94484..96796] [NCBI]
Genbank nucleotide accession
OP883945.1 [NCBI]
CDS location
range 94484 -> 96796
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
9f9c7d8419157fd7e7de29d588d13fef573679912909ba7b96ea05dbfe2de1f2

                    

                    
                      ColabFold
                    
                  

                  

                  

                    

                      Source
                      ColabFold
                    

                    

                      Method
                      ColabFold
                    

                    

                      Resolution
                      0,3268
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
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Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50