Protein

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Genbank accession
YP_009624324.1 [GenBank]
Protein name
EPS depolymerase
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MELKSVVALDGNGNALPGAKTYVYLQGTNTLASIFGPTFQPLSNPMTTDANAVATFTAADGAYDIQFETNNLKGPKFSIQLVTQSELARASIINGVSRFSELRAKKPDYEGQRVYLRSHTPSTLAVFVQQGGGWFTGRMVAQTDDGGYIASSGDNWHWKRDIDIEELDVTHFGAVSDAITDASGACEKMFDFLNGSYANSVNPRASTSPIKFPAGTFLVAPLDLSAKGVVTSAAALKLARQRVAWRLNGLKGTGIAAAGGNAATPDKVDLDYVKANKPELYMDWSVQENHNGRNPVGFFGLVGPSVDYGKAAQTTIISTKENDTYVFDVKAGLVVIHGIRFNGQNPDRRNWTTGYGPAPGAAPDNTQGFFHNWKSEAQYVNVTCCHADSVGGFMFDIMDSLDCEFSQIYSSLCWGDIIRAGWSNAVNGNWDHGTALKLADCNFQWHQGITPLRLVKIGQCQISNVWIEHSLCPADLHDCQATVDTLCVESSAYSVQAYGSRIVMTQFSNPTGVQFDVTTKPYLDNGSNNPDWHSYYEQPDKSQFAAWNKYYPVPQGSKIEIKNSAYENGFVRIENFGMEIDGSVKPGWIAGHSIRNPTDAEAWVLVGLLEMQQNEVNYTFTQIAADLAAWIQARNDAVAADPSGATKPYTDAEIATKKGQLRTAFEKDKNLMSQFQIEILGSRFIDSGTTDSQSIKLPKQLSGVNEDKSALANGNPGKTLINIMHLKTANSTSTNSSGQTSVWHENDSCVLEVVTTSWHSVPQIWVRLAPRTFAASVFIHGNGVSRFQAGSCSRFVFNGFRQAMKPGAAGSITVDGGVQPVVNKWAIHTDKAGLGLNHDGSITLKTIAPPRLPAAITLADVGAWTTVVGPDGVQYAMPLFKIPTA
Physico‐chemical
properties
protein length:885 AA
molecular weight: 95882,35200 Da
isoelectric point:5,90230
aromaticity:0,09718
hydropathy:-0,24271

Domains

Domains [InterPro]
DC_0717
ATT
65–204
DC_0717 DC_0387
IPR012334
STR
167–473
IPR012334
DC_0716
STR
202–626
DC_0716
YP_009624324.1
1 885
Architecture
ATT
STR
STR
ATT 65-204 | STR 205-626 | STR 670-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009624324.1
1 885
Domain Start End Length (AA) Confidence
N-terminal 1 181 181 0,9945
Central domain 182 606 426 0,9953
C-terminal 607 885 278 0,9322
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-181
Central
182-606
C-terminal
607-885

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagS_Vid5
[NCBI] 		2099652 Uroviricota > Caudoviricetes > Vidquintavirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009624324.1 [NCBI]
Genbank nucleotide accession
NC_042120 [NCBI]
CDS location
range 7122 -> 9779
strand +
CDS
ATGGAATTAAAAAGCGTTGTCGCTCTTGATGGGAACGGGAACGCCCTTCCCGGAGCGAAGACTTATGTCTACCTTCAAGGGACAAACACCCTCGCGTCCATTTTCGGACCGACCTTCCAACCTTTGTCTAACCCTATGACCACAGATGCTAACGCTGTTGCGACCTTTACAGCAGCGGACGGTGCATACGATATTCAGTTTGAAACCAACAATCTGAAAGGTCCAAAGTTTTCTATCCAGTTAGTTACACAATCCGAATTAGCGCGCGCATCCATTATTAATGGCGTCTCGCGTTTCAGTGAGTTGCGTGCGAAGAAACCAGATTATGAAGGCCAGCGCGTTTACCTGCGCTCGCATACGCCGTCGACGTTAGCGGTCTTTGTGCAGCAGGGCGGGGGCTGGTTTACTGGCCGTATGGTCGCGCAGACGGACGATGGTGGGTACATTGCGTCGTCTGGTGATAACTGGCACTGGAAGCGCGACATTGACATCGAAGAGCTAGACGTCACGCACTTTGGTGCTGTTTCCGACGCCATCACGGATGCTTCCGGTGCTTGCGAAAAGATGTTTGACTTTTTAAACGGGAGTTATGCTAATTCCGTTAACCCGCGTGCGTCCACCTCACCTATTAAGTTCCCTGCCGGGACGTTCCTTGTAGCACCGCTTGACCTATCCGCTAAGGGTGTGGTTACCAGTGCAGCAGCCTTGAAACTGGCACGTCAGCGCGTAGCATGGCGTCTTAACGGCCTTAAAGGAACTGGTATCGCTGCTGCTGGTGGAAACGCTGCGACACCGGACAAAGTGGATCTGGACTATGTGAAGGCTAACAAACCTGAGCTTTACATGGATTGGTCTGTCCAGGAGAACCATAACGGTCGAAACCCGGTAGGTTTCTTTGGGCTTGTGGGTCCGTCCGTTGATTATGGTAAAGCTGCTCAGACTACGATCATTAGTACCAAAGAAAATGACACTTATGTTTTCGATGTGAAAGCTGGGTTAGTCGTTATCCACGGTATTCGCTTTAACGGGCAGAACCCTGACCGTCGCAACTGGACTACCGGGTACGGACCTGCTCCTGGTGCTGCGCCGGACAACACACAAGGCTTCTTCCACAACTGGAAATCCGAAGCTCAGTATGTCAACGTAACCTGCTGCCACGCGGATAGCGTCGGTGGTTTTATGTTCGATATTATGGATTCGCTGGACTGCGAATTTAGCCAGATTTATTCTTCCTTGTGTTGGGGGGATATTATCCGCGCAGGTTGGAGTAACGCAGTCAATGGTAACTGGGATCACGGTACAGCACTTAAATTGGCTGACTGTAACTTCCAGTGGCACCAGGGTATCACGCCTCTTCGCCTGGTTAAAATCGGTCAGTGTCAGATCAGTAACGTATGGATAGAGCACTCACTTTGTCCGGCAGACCTGCACGATTGTCAGGCTACTGTGGACACCCTTTGTGTTGAGTCAAGCGCGTATTCTGTGCAAGCATACGGTTCACGTATCGTGATGACGCAGTTCTCGAACCCGACAGGTGTTCAGTTCGACGTTACAACTAAACCGTATCTGGATAACGGTTCGAATAACCCTGATTGGCATTCTTACTATGAGCAGCCTGACAAGTCCCAGTTTGCTGCGTGGAATAAGTATTATCCTGTTCCTCAAGGTTCCAAGATTGAGATTAAGAACAGCGCATACGAAAACGGATTTGTACGTATCGAGAACTTCGGTATGGAAATCGACGGTTCTGTCAAGCCGGGTTGGATAGCGGGTCACAGTATTCGAAACCCTACCGACGCAGAAGCATGGGTGTTAGTTGGTCTACTGGAAATGCAGCAGAACGAAGTCAACTATACCTTCACGCAAATCGCAGCTGACCTTGCAGCATGGATCCAGGCTCGTAACGATGCTGTTGCAGCGGACCCAAGCGGGGCCACTAAACCGTACACAGACGCTGAAATTGCAACGAAGAAGGGCCAGCTCCGTACCGCTTTCGAGAAAGATAAGAACTTAATGTCTCAGTTCCAAATTGAGATTTTAGGAAGCAGATTTATCGACTCGGGAACAACGGACTCGCAGAGCATTAAGTTGCCAAAACAATTGTCGGGTGTTAACGAAGATAAAAGCGCCTTAGCAAATGGTAACCCAGGCAAGACGCTGATCAACATTATGCATCTTAAGACTGCTAACTCCACATCTACTAACTCATCTGGACAAACCAGCGTCTGGCACGAGAACGATAGTTGTGTGCTGGAAGTGGTGACAACCAGTTGGCACAGTGTTCCTCAGATTTGGGTTCGACTTGCACCTCGTACATTTGCGGCCTCTGTGTTCATTCATGGAAACGGTGTGTCTCGCTTCCAAGCGGGTTCTTGCTCCAGATTTGTATTTAACGGTTTCCGTCAAGCTATGAAGCCTGGTGCCGCGGGCTCTATTACGGTCGATGGTGGTGTGCAACCTGTGGTTAATAAATGGGCCATCCACACAGACAAAGCAGGTCTGGGGCTCAACCACGATGGTTCCATTACGCTTAAGACAATTGCACCCCCAAGACTGCCGGCAGCTATCACACTGGCTGACGTTGGTGCGTGGACAACGGTTGTAGGCCCTGACGGCGTGCAGTATGCTATGCCTTTGTTCAAGATCCCTACAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
25e57f9e705d78fc68fac713c494318e6ff85772fe2e9d05b656a2ef06842fa5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5539
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagS_Vid5 Truncaite,L., Simoliunas,E. and Meskys,R. 2011-08-10 — GenBank