Protein

View in Explore
Genbank accession
XAO34216.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MVNGVSQQPFTLRLASQAELQENGLSTVAQGLKKRPPTKHIKRLGSAITGSAYIHTINRDAVERYEVVITNGDLKVYDTAGNQKTVNFPNGKAYLNSTDPATSFRAVTVADYTFIVNKKTVTAASATNSPTRPFESLANVKVGLYSKTYTITVSGVGTATYSTPDGTVASHAAQITTDYIANQLANGLITLGGFTSVNQVGSVIYITRPTDYTISATDGYNNAALNVIKGTVQRFSGLPANANFQDFTVEIAGDNTSESDNYWVKFDKTGNNSGVWRETIKPGISVGLSPSTMPWVLVRESDGTFTFKTISWTNRLVGDEDSAPHPSFVGRTIQDVFFYRNRLGFIADEAVVMSEAGQFFNFYPTTVTQLLDSDRIDVSASHTKVSNLNFAVAFNKDLLLFSSQTQFSVESGDLLTPRSVSIKPTTEFECSTLAPPVGIGRNVYFAVPKGEFEGFREFYVADNAGTNDAAEITGHVPKYIPKGAYKIAAALNEDFFVVLTSGEPNAMYAYKFYWNSNEKLQSSWSKWTFPSTDTILHAEFIQSELFILINRPDGLYLEKLSVALGDIGTNEPYNVHLDRKLTVPKASLTYDGTYTIISSAALPWNPTDGTYTAVVATSQPQKAGVLYPVIWDGTNAKILGNRVDSDLIVGRRYAFRYRFSPLLVRQQSGQGQKADTVARLQIRNMQVNFSESGNFQAKVTPYGRDTYTYTYSGKTLGLPSANIGAIGIEDGKFRFPVMSQNTTVDIELFSDSPLPCAFLSADWEGYYVRRSQAV
Physico‐chemical
properties
protein length:774 AA
molecular weight: 84866,05070 Da
isoelectric point:6,30921
aromaticity:0,11370
hydropathy:-0,21770

Domains

Domains [InterPro]
IPR058003
TTP
1–773
IPR058003
XAO34216.1
1 774
Architecture
TTP
TTP 1-773 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO34216.1
1 774
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,9609
Central domain 126 330 206 0,3493
C-terminal 331 774 443 0,2528
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-330
C-terminal
331-774

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage PY04L1
[NCBI] 		3145149 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO34216.1 [NCBI]
Genbank nucleotide accession
PP358254 [NCBI]
CDS location
range 26961 -> 29285
strand +
CDS
ATGGTGAACGGGGTCTCTCAGCAACCCTTCACGCTGCGTCTCGCGTCTCAAGCTGAGTTGCAGGAGAACGGCCTCAGTACCGTGGCTCAGGGGTTGAAGAAGAGGCCCCCAACCAAGCACATCAAACGCCTCGGCAGTGCCATCACCGGCTCTGCCTACATCCACACCATCAACCGTGACGCTGTGGAGCGGTATGAGGTGGTCATCACGAACGGTGACCTGAAGGTCTACGACACGGCAGGGAACCAGAAGACGGTGAACTTCCCGAATGGGAAGGCGTACCTGAACTCCACGGACCCTGCTACGTCCTTCAGGGCCGTCACTGTGGCGGACTACACGTTTATCGTGAACAAGAAGACTGTCACCGCGGCCAGTGCCACGAACTCCCCAACGCGGCCCTTCGAGTCCCTCGCAAACGTGAAGGTTGGGCTCTACTCGAAGACCTACACCATCACCGTCTCCGGTGTGGGCACGGCCACCTATAGTACCCCCGACGGCACCGTTGCGTCCCACGCGGCACAGATCACCACGGACTACATCGCCAACCAGCTTGCGAATGGTCTCATTACCCTCGGTGGATTCACCTCAGTGAACCAGGTGGGCTCCGTCATCTACATCACCCGGCCCACCGATTACACCATCTCCGCAACAGATGGGTATAACAACGCGGCCCTGAACGTGATTAAGGGGACGGTGCAGAGGTTCTCGGGCCTTCCCGCGAATGCGAACTTCCAGGACTTCACTGTGGAGATCGCAGGGGACAACACCTCGGAGTCCGATAACTATTGGGTCAAGTTTGACAAGACCGGGAACAACTCCGGTGTCTGGCGCGAGACCATCAAGCCAGGCATCTCGGTTGGTCTTAGTCCCAGCACGATGCCGTGGGTACTGGTCCGTGAGTCGGACGGCACGTTCACCTTCAAAACCATCTCCTGGACGAACCGGCTGGTGGGTGATGAAGACTCCGCTCCACACCCATCGTTTGTGGGCCGCACCATCCAGGATGTGTTCTTCTACCGGAACCGCCTGGGCTTCATCGCGGATGAGGCTGTGGTGATGTCGGAGGCTGGCCAGTTCTTCAACTTCTACCCGACCACGGTGACGCAACTCCTGGATTCCGACCGCATCGACGTATCAGCATCCCACACGAAAGTCTCGAACCTGAACTTCGCGGTGGCCTTCAACAAGGACCTCCTGCTGTTCTCCTCGCAGACTCAGTTCTCGGTGGAATCAGGTGACCTCCTGACACCCAGGAGCGTCTCCATCAAGCCCACCACGGAGTTCGAGTGCAGCACCCTTGCGCCTCCCGTTGGGATTGGACGCAACGTCTACTTCGCGGTCCCTAAGGGTGAGTTCGAGGGCTTCCGTGAGTTCTACGTAGCGGACAACGCAGGCACCAATGATGCGGCTGAGATCACCGGCCACGTCCCGAAGTACATCCCGAAGGGGGCCTACAAGATCGCTGCGGCTCTCAACGAGGACTTCTTCGTGGTGCTGACTTCAGGGGAACCCAACGCGATGTATGCGTACAAGTTCTACTGGAACAGCAACGAGAAGCTCCAAAGCTCCTGGTCCAAGTGGACCTTCCCGAGCACGGACACGATTCTCCACGCGGAGTTCATCCAGTCGGAACTGTTCATCCTCATCAACCGGCCCGATGGTCTCTACCTGGAGAAGCTCAGTGTGGCTCTCGGGGACATCGGGACGAACGAGCCCTACAACGTCCACCTGGACCGCAAGCTGACGGTGCCGAAAGCAAGCCTCACGTATGACGGCACGTACACCATCATCTCCTCCGCGGCTCTCCCGTGGAACCCAACGGATGGAACGTACACGGCAGTGGTGGCCACCAGTCAGCCGCAGAAGGCTGGCGTCCTCTACCCGGTCATTTGGGATGGGACGAACGCCAAGATTCTCGGTAACCGTGTGGACTCCGACCTCATCGTTGGTAGGCGCTACGCCTTCCGCTATCGCTTCTCGCCGCTACTGGTCCGCCAGCAGTCCGGCCAGGGCCAGAAGGCGGACACGGTTGCACGTCTCCAGATTCGCAACATGCAAGTCAACTTCTCGGAGAGCGGCAACTTCCAGGCAAAGGTCACGCCTTACGGGCGGGACACCTACACGTACACCTACTCAGGAAAGACCCTCGGGCTGCCTTCGGCAAACATCGGGGCCATCGGAATTGAAGATGGCAAGTTCCGGTTCCCGGTGATGTCGCAGAACACCACCGTGGACATCGAACTCTTCTCGGACTCGCCGCTCCCCTGCGCCTTCTTGAGTGCAGATTGGGAAGGCTACTATGTCCGACGAAGCCAGGCGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3c4f5acbde7fe885b247f470ac5d1f207cbf125e3d02b80282d24e3d53a79cd9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3353
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage biocontrol success depends on synergistic interactions with suppressive soil microbiota Fields,B., Franco Ortega,S., Harper,A. and Friman,V. 2024-11 — GenBank