Protein

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Genbank accession
XYM60563.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MIPGAVAGTIPGVAAAVASPPATNLKAWYDAADFDSLTLRDGEFVSQWDDKSGNGFHLVQATDANQPLFVDEGKPRVRLPGSPRRMTAPMTTTAQPLTIVLVCSTEQAAGGVFVDATSSSNRVVVGALSGSSNDFVMWAGSGSGVPSYGNQPARFGLYVSTYNGASSTARRNGAQVATGNPGSQSMTGITLGCRYNVERFLPGDVYEMLIYSGALSASDLAALEQYLMTKWDIPLPPPPVSAQYVYVQDLDSGRSLYSKAADTATVTNAAASLAKLATALIVLERKGSVLDSETVTVEAGDLPGDGNTLAGLEAGDVLTWRELLHGLIIPSGNDAALCIGRVIGTEIYAGTGTGTTGVTRFVEEMNALAASLGMTNTTFGTPSGVGGDNFYTVRDINTLGRAFYRKALLRDISAKPTYDMTITGANARSEPIRHTSAVVSGPFSDQTQGLTDDNVIGSKTGSAPASNSYSINAVWVSPNGTKVLVTVLRSSTSYARYLDIRAIFYRLVKDYPYLAAGAPAPASDPSFASTTLLIGADTAIIDESPLAQTVSVSGATRNSANPIIGTHSIQTDGVDDRISVADGAGVSMGSGDWTLEFWYRGTGAEQSPASGLNAMAGKYSRSGNQREFGLVYATANQFEIYCSGDGSAFEVAINPLPGGNTEAGIFFNGAARHFCIQRSGTEVALFINGEKQAAVITFAGSIYDGTAPFMVGARASGASFEDPTAGMFDEIRLTKGVARYPTAMFTPEPRPYPRS
Physico‐chemical
properties
protein length:755 AA
molecular weight: 78942,29960 Da
isoelectric point:4,94024
aromaticity:0,08477
hydropathy:-0,05099

Domains

Domains [InterPro]
DC_0797
STR
3–348
DC_0797 DC_2085
IPR013320
STR
92–224
IPR013320 IPR012338 G3DSA:2.60.120.200
IPR012338
STR
212–523
IPR012338 IPR013320
IPR001967
ENZ
238–423
IPR001967 PF13385
IPR000871
Unmapped
244–496
IPR000871
IPR018044
Unmapped
271–282
IPR018044 IPR018044
XYM60563.1
1 755
Architecture
STR
STR 3-737 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM60563.1
1 755
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,3513
Central domain 61 259 200 0,5301
C-terminal 260 755 495 0,3758
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-259
C-terminal
260-755

Taxonomy

  Name Taxonomy ID Lineage
Phage Erythrobacter phage ZS04
[NCBI] 		3413946 Viruses >
Host Erythrobacter sp. JL475
[NCBI] 		383381 Pseudomonadota > Alphaproteobacteria > Sphingomonadales > Erythrobacteraceae > Erythrobacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM60563.1 [NCBI]
Genbank nucleotide accession
PV416405 [NCBI]
CDS location
range 30120 -> 32387
strand +
CDS
ATGATCCCCGGCGCTGTTGCTGGAACCATCCCCGGGGTGGCGGCCGCCGTCGCCTCGCCTCCAGCCACAAACCTAAAGGCGTGGTACGACGCCGCCGATTTCGACTCGCTGACGCTTCGTGATGGCGAGTTCGTCTCGCAATGGGACGACAAGAGCGGCAACGGCTTTCACCTTGTTCAAGCCACCGACGCCAACCAGCCGTTGTTCGTCGATGAAGGAAAGCCGCGCGTTCGGCTCCCCGGTTCTCCGCGCCGCATGACGGCTCCGATGACGACGACCGCGCAACCCCTTACGATTGTGCTGGTCTGTTCGACCGAGCAGGCGGCGGGCGGCGTTTTCGTGGACGCGACAAGCTCCAGCAATCGGGTCGTAGTGGGGGCTTTGAGCGGCAGTTCTAACGACTTCGTTATGTGGGCGGGGTCGGGATCGGGCGTTCCGTCTTATGGGAACCAGCCGGCTCGCTTTGGTCTATATGTCTCGACCTATAACGGCGCGTCATCGACCGCGCGCCGCAATGGTGCGCAAGTCGCGACGGGCAATCCCGGCTCGCAAAGCATGACGGGAATTACCCTCGGTTGCCGCTATAATGTCGAACGGTTCCTCCCCGGCGATGTTTACGAAATGCTGATCTATTCGGGCGCGCTTTCCGCGTCCGATTTGGCGGCGCTTGAGCAATATCTCATGACCAAGTGGGACATTCCCCTGCCGCCCCCGCCTGTGTCCGCCCAATATGTCTATGTGCAAGATCTCGACAGCGGCCGGAGCCTGTATTCAAAAGCGGCTGACACCGCGACCGTCACGAACGCGGCGGCCAGCCTAGCAAAGCTGGCGACGGCTCTGATCGTTCTCGAACGAAAGGGATCGGTTCTCGACTCCGAAACTGTGACCGTTGAGGCTGGCGATCTGCCGGGGGATGGGAACACGCTGGCCGGATTAGAAGCCGGCGATGTTCTGACATGGCGAGAACTTCTCCACGGCCTGATCATCCCCTCGGGCAACGACGCCGCGTTGTGCATCGGCCGGGTGATCGGAACGGAAATATACGCCGGGACGGGGACTGGCACGACCGGGGTGACGCGGTTCGTCGAGGAAATGAACGCGCTTGCCGCCTCGCTTGGTATGACGAACACGACGTTCGGCACGCCCTCGGGCGTGGGCGGCGACAATTTCTACACGGTTCGAGACATCAACACGCTGGGCCGGGCCTTCTATCGCAAGGCGTTGCTTCGCGACATTTCCGCAAAGCCAACCTACGACATGACGATCACAGGAGCGAACGCGCGCTCCGAGCCGATCCGCCACACATCGGCGGTCGTCAGCGGTCCTTTTTCGGACCAGACGCAAGGTTTGACAGACGACAACGTGATCGGCTCCAAGACGGGGTCCGCGCCGGCAAGCAACAGCTACAGCATCAACGCCGTATGGGTGTCGCCGAACGGCACAAAGGTGCTGGTGACGGTGCTTAGGAGTTCGACCAGCTATGCCCGGTATCTTGATATCCGGGCGATCTTCTACCGGCTGGTCAAGGATTACCCCTATCTCGCCGCAGGCGCTCCTGCGCCGGCATCTGATCCTTCGTTCGCCAGCACAACCTTGCTGATCGGCGCGGACACAGCGATCATCGACGAAAGCCCGCTGGCGCAGACCGTTTCGGTCAGCGGCGCGACGCGCAATAGCGCCAACCCGATCATCGGCACGCATTCGATTCAGACCGACGGCGTGGACGACCGCATTTCCGTAGCCGACGGCGCGGGCGTCTCGATGGGAAGCGGCGACTGGACACTGGAGTTCTGGTATCGGGGCACCGGGGCCGAACAATCTCCTGCGAGCGGCCTGAACGCTATGGCTGGCAAATATAGCCGCAGCGGAAATCAGCGAGAGTTCGGTCTTGTTTATGCGACGGCAAACCAGTTCGAGATTTATTGTTCTGGAGATGGGAGCGCGTTCGAAGTCGCGATCAACCCCCTGCCTGGCGGAAACACAGAGGCCGGCATTTTCTTTAATGGCGCGGCTCGCCATTTCTGCATTCAGCGCAGCGGGACTGAAGTCGCCTTGTTCATCAATGGGGAAAAGCAGGCGGCCGTCATCACGTTCGCCGGCTCCATTTACGACGGCACCGCGCCGTTCATGGTTGGCGCGCGCGCCTCGGGGGCCAGCTTCGAAGATCCGACGGCAGGCATGTTCGACGAAATCCGCCTCACCAAGGGCGTGGCCCGATATCCCACGGCGATGTTCACGCCAGAACCGAGGCCATATCCGAGAAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
27016d90b913126f64333dc0eb22413cdc753f3744f1888202846480de02943d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8434
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50