Protein

View in Explore
Genbank accession
WYW04439.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYPINSVARDFTIPFEYLARKFVVVTLIGATRRELVLNTDYRFSTGTIITTTKAWGPGDGFNLIEIRRLTSATERLVDFADGSILRAYDLNISSVQSLHIAEEARDLTADTIGVNNDGNLDARARRIVNLADAIEDGDAVNLRQQKTWAGSALNQAQAAAQSAAQAAQSAAQALANKQATDQNLAATVQNNAQSLTNNQQSYQNLLAAQQQAAASSASASASANSATASEASRQASAVSASQSYTDANRSKTEADRAKTEADKLGNFNALGGALSSVNGTQVFWKGEQVSMNAGFQARTGADSEANFTMTDGNGNDPIRLVRTSDRRVHLYGNASGDGDRMVWGSTDVSTPKNFSVGGTFVANGQATFNGNMTTTGLTSTGEIVANGTVRSKSGVVQSFAPNQSANCHFWFYDSVGNSRGVLYADQSGVVRVQAGGALAATFGTDGVTQLNALNANRSGGQSYFYSPYAQIDGAMYGTCNLQLQGTGGGVAALGFHNAGRVAGALWLNNDNQLWWMQNSGNNAQMTTNQNVMNHIGGMTADQVGSIASMYNQSGTNLGIGGGVAGGSLRYASHNNVSGQGGSGSWRCLGSGNNGGVCNYVRYA
Physico‐chemical
properties
protein length:612 AA
molecular weight: 64094,45380 Da
isoelectric point:7,01299
aromaticity:0,07353
hydropathy:-0,33627

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil
DC_0657
STR
1–608
DC_0657
WYW04439.1
1 612
Architecture
ATT
STR
ATT 1-131 | STR 132-608 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04439.1
1 612
Domain Start End Length (AA) Confidence
N-terminal 1 315 315 0,8379
Central domain 316 514 200 0,3459
C-terminal 515 612 97 0,9507
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-315
Central
316-514
C-terminal
515-612

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Pori-3
[NCBI] 		3132682 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04439.1 [NCBI]
Genbank nucleotide accession
PP496478.1 [NCBI]
CDS location
range 35573 -> 37411
strand +
CDS
ATGGCTACGACACCTAAGACGGTGCGGACCTACCCTATCAACTCCGTCGCCCGTGACTTCACCATTCCGTTCGAGTATCTCGCCCGAAAGTTTGTGGTAGTTACTCTGATCGGCGCGACCCGTAGGGAATTGGTTCTAAACACCGACTACAGATTTTCCACCGGAACCATCATCACGACTACCAAAGCGTGGGGTCCGGGTGACGGTTTCAACCTGATCGAGATTCGCCGCCTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCGGATGGCTCGATCCTGCGCGCTTACGACCTGAACATCTCAAGCGTTCAATCTCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGCAACCTTGACGCTCGTGCTCGACGCATCGTGAACTTGGCTGACGCTATCGAGGACGGTGACGCTGTAAACCTGCGCCAGCAGAAGACTTGGGCCGGGTCTGCCCTGAACCAAGCTCAGGCGGCTGCTCAATCGGCTGCTCAAGCTGCACAGTCTGCCGCTCAGGCGCTTGCCAACAAACAGGCGACTGACCAGAACCTTGCGGCGACCGTTCAGAACAACGCTCAGTCCCTCACTAACAACCAGCAGTCCTATCAGAATCTCTTAGCTGCCCAACAGCAAGCCGCTGCTTCCTCTGCAAGTGCCTCTGCAAGTGCGAACTCTGCGACCGCCTCTGAGGCGTCCCGTCAGGCTTCTGCTGTGAGTGCATCGCAGTCCTATACGGATGCCAATCGGTCGAAGACTGAAGCGGACCGTGCGAAGACTGAAGCGGACAAGCTGGGCAACTTCAACGCCCTCGGTGGTGCCCTGTCGTCCGTCAACGGGACTCAGGTCTTCTGGAAGGGTGAGCAGGTATCCATGAATGCTGGCTTCCAAGCTCGCACGGGTGCCGACAGTGAGGCGAACTTCACGATGACCGATGGGAATGGCAACGACCCTATTCGTCTTGTTCGCACCTCTGACCGCCGAGTCCACCTTTATGGCAACGCCTCGGGTGACGGTGATCGGATGGTCTGGGGATCGACTGACGTGTCCACGCCTAAGAACTTCTCAGTGGGCGGTACGTTTGTCGCGAACGGTCAGGCGACATTCAACGGGAATATGACCACGACTGGACTCACATCGACCGGTGAGATCGTGGCTAACGGAACCGTCCGCTCTAAGAGTGGCGTGGTCCAGTCGTTCGCCCCGAACCAATCTGCCAACTGTCACTTCTGGTTCTACGACAGCGTGGGCAACTCCCGTGGGGTTCTCTATGCGGACCAATCCGGTGTCGTCCGGGTACAGGCTGGTGGTGCCTTAGCGGCGACCTTCGGGACCGATGGCGTGACTCAACTCAACGCCCTCAACGCCAACCGCTCTGGCGGTCAGTCGTACTTCTACAGCCCATATGCCCAGATCGACGGGGCCATGTATGGCACCTGCAACCTGCAACTGCAAGGCACTGGTGGTGGCGTGGCTGCGCTGGGCTTCCACAACGCTGGCCGTGTGGCTGGTGCCCTGTGGCTGAACAACGACAACCAGCTTTGGTGGATGCAGAACTCTGGCAACAACGCCCAGATGACGACCAACCAGAACGTGATGAACCACATCGGCGGCATGACCGCTGACCAAGTGGGCTCTATCGCTTCAATGTACAACCAGTCGGGGACAAACCTCGGGATTGGTGGTGGTGTCGCTGGTGGCAGTCTGCGCTATGCCTCTCACAACAACGTGTCTGGGCAGGGCGGTTCCGGTTCGTGGCGCTGCCTCGGTTCGGGCAACAACGGCGGCGTGTGCAATTACGTCCGCTACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8dd1819a2bccc0831d0939bbf499dfadd2961ee6f4b34ac52b68ca837b15d928
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6714
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank