Protein

Genbank accession
YP_009842145.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,87
Protein sequence
MISKLKPIDLNCSIFTVYDYTGASIQELLCQFYSKINELIDSQNQVMDLSKWLVGQGLKEEVAKQLNQWLIDGTLSNIINETLFNDLNNKINSNIEDIKNNKKEIDELITIWNNIKCFNIVDFGAIGDGETNNNKAFEDCINSCVENNIRGLLIPSGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCQGSIITSDKNIDIFTNGLYAENIGIFGNRRALSQNGIGQMDGGFGNWIEIEKVKIHGCGNNGINAEYGLITPIINQCWMYQNGNNGIRIGKNKGTYTGETNCLLIEKCFINRNESHGIYLDVKGRAYTIKNNDLEQNGEMSDPLRNNKGTDYNDIVYGCYMKVEGEGGFTAGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGIKIGNNNMYGRHKVRVINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRSTGRVEKYSIENMIQSATYDGSTYTNVYLNKSSVPYELQEDGQGNKLIGTTFLTSDGTSIGLVVDFSWTHGLFKIRKDRTSLIKTGNAKFMENGGFTTINGGNTPVKIYIDHDNEIVIL
Physico‐chemical
properties
protein length:607 AA
molecular weight: 68462,28610 Da
isoelectric point:5,17004
aromaticity:0,10214
hydropathy:-0,46738

Domains

Domains [InterPro]
Coil
88–108
Coil IPR011050
IPR012334
117–557
IPR012334
IPR024535
118–340
IPR024535
YP_009842145.1
1 607
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD2
[NCBI] 		2420237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009842145.1 [NCBI]
Genbank nucleotide accession
NC_048738 [NCBI]
CDS location
range 14909 -> 16732
strand +
CDS
ATGATTAGTAAATTAAAACCTATTGACCTTAACTGTAGTATATTTACAGTTTACGATTATACTGGAGCATCTATACAAGAATTATTGTGCCAATTTTATAGTAAGATAAATGAATTGATTGACTCACAAAATCAAGTTATGGATTTATCTAAATGGTTAGTAGGTCAAGGTTTAAAAGAAGAAGTAGCTAAACAACTTAATCAATGGTTAATTGACGGAACTTTATCAAACATAATAAATGAAACCTTATTTAACGATTTAAATAATAAAATTAACTCTAACATAGAAGATATTAAAAATAATAAAAAAGAAATAGATGAATTAATAACTATTTGGAATAATATTAAATGTTTTAATATTGTTGATTTTGGAGCAATTGGTGATGGTGAAACCAACAACAATAAAGCCTTTGAAGATTGTATAAATTCATGTGTTGAAAATAATATACGTGGTTTGTTAATTCCTAGTGGTAAATTTTATATTACAGAGGGTATTAATACAAAAGGTGTTAAAATCATAGGTATGGGTGACCCCTATATTCCATTTTTAGAATGGGAATATACAAGACCAAACTCAAAATTAGATGAATATAAAAAATATTTAAATAAGTGTCAAGGTAGTATAATAACATCAGATAAAAATATAGATATATTCACTAATGGTTTATATGCTGAAAATATAGGTATTTTTGGTAATAGAAGAGCATTATCTCAAAATGGTATAGGACAAATGGACGGTGGTTTTGGTAACTGGATAGAAATTGAAAAAGTTAAAATCCACGGTTGCGGTAATAATGGTATTAACGCTGAATATGGATTAATAACACCTATCATCAATCAATGTTGGATGTACCAAAATGGTAACAATGGTATAAGAATTGGTAAAAACAAAGGAACTTACACTGGTGAAACAAATTGCTTACTAATTGAAAAGTGTTTTATAAACAGAAATGAAAGTCATGGTATTTACTTAGATGTAAAAGGTAGAGCATATACCATTAAGAACAATGACTTAGAACAAAATGGAGAAATGAGCGACCCATTGAGAAATAATAAAGGTACGGATTATAATGACATAGTTTACGGTTGTTATATGAAAGTAGAAGGTGAAGGTGGATTTACTGCTGGTTCAATAGATTTTAGTAACAACTATTCAGAAGAAACTTTAGGTTTATTATACTTAGAAAGTCCCGACAATAAAATATGCCAAGGTGTAAAATTTGAATCTAATATGTGGCGACCATATAATCAAGAATTATATTCAAATGGATTACTGTTAAAAGGTTGGATTGAAGGAATTAAAATTGGTAATAATAATATGTACGGTAGGCATAAAGTAAGAGTTATCAATGCAAATACTTATGGTATTGAAACTGACACAGATATAACAAACCCTGTATATAAAAATAAAAATATATCTATTGAAAAACATTATGACTATAACGGTACAATGGTTGACTTTAGAAGTACAGGAAGAGTTGAAAAATATTCTATTGAAAATATGATACAATCAGCAACTTATGATGGTAGCACATATACCAACGTATATTTAAATAAATCTAGCGTACCGTATGAATTACAAGAGGACGGACAAGGTAATAAATTAATTGGTACAACTTTTTTAACATCAGACGGTACAAGTATTGGTTTAGTTGTTGACTTCTCTTGGACTCATGGACTATTTAAAATCAGAAAAGATAGAACATCATTAATAAAAACTGGTAACGCTAAGTTTATGGAGAATGGTGGTTTTACAACAATAAACGGTGGTAATACACCTGTAAAAATCTATATTGACCATGACAATGAAATAGTAATTTTATAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
59df37b64e527fa5bdc0f5da22ba7672d9f7ce732eb0e3fa8e3ab8ff700e524a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6579
Evidence 0,6579
Download PDB

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD2 Shin,D. and Ryu,S. 2023-05-24 — GenBank