Protein

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Genbank accession
YP_009842145.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,87
Protein sequence
MISKLKPIDLNCSIFTVYDYTGASIQELLCQFYSKINELIDSQNQVMDLSKWLVGQGLKEEVAKQLNQWLIDGTLSNIINETLFNDLNNKINSNIEDIKNNKKEIDELITIWNNIKCFNIVDFGAIGDGETNNNKAFEDCINSCVENNIRGLLIPSGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCQGSIITSDKNIDIFTNGLYAENIGIFGNRRALSQNGIGQMDGGFGNWIEIEKVKIHGCGNNGINAEYGLITPIINQCWMYQNGNNGIRIGKNKGTYTGETNCLLIEKCFINRNESHGIYLDVKGRAYTIKNNDLEQNGEMSDPLRNNKGTDYNDIVYGCYMKVEGEGGFTAGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGIKIGNNNMYGRHKVRVINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRSTGRVEKYSIENMIQSATYDGSTYTNVYLNKSSVPYELQEDGQGNKLIGTTFLTSDGTSIGLVVDFSWTHGLFKIRKDRTSLIKTGNAKFMENGGFTTINGGNTPVKIYIDHDNEIVIL
Physico‐chemical
properties
protein length:607 AA
molecular weight: 68462,28610 Da
isoelectric point:5,17004
aromaticity:0,10214
hydropathy:-0,46738

Domains

Domains [InterPro]
DC_0396
ATT
1–175
DC_0396 DC_0525
Coil
Unmapped
88–108
Coil IPR011050
IPR012334
STR
117–557
IPR012334
IPR024535
ENZ
118–340
IPR024535
YP_009842145.1
1 607
Architecture
ATT
STR
RBD
ATT 1-175 | STR 176-557 | RBD 558-607
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009842145.1
1 607
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9874
Central domain 133 500 369 0,9836
C-terminal 501 607 106 0,8874
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-500
C-terminal
501-607

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD2
[NCBI] 		2420237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009842145.1 [NCBI]
Genbank nucleotide accession
NC_048738 [NCBI]
CDS location
range 14909 -> 16732
strand +
CDS
ATGATTAGTAAATTAAAACCTATTGACCTTAACTGTAGTATATTTACAGTTTACGATTATACTGGAGCATCTATACAAGAATTATTGTGCCAATTTTATAGTAAGATAAATGAATTGATTGACTCACAAAATCAAGTTATGGATTTATCTAAATGGTTAGTAGGTCAAGGTTTAAAAGAAGAAGTAGCTAAACAACTTAATCAATGGTTAATTGACGGAACTTTATCAAACATAATAAATGAAACCTTATTTAACGATTTAAATAATAAAATTAACTCTAACATAGAAGATATTAAAAATAATAAAAAAGAAATAGATGAATTAATAACTATTTGGAATAATATTAAATGTTTTAATATTGTTGATTTTGGAGCAATTGGTGATGGTGAAACCAACAACAATAAAGCCTTTGAAGATTGTATAAATTCATGTGTTGAAAATAATATACGTGGTTTGTTAATTCCTAGTGGTAAATTTTATATTACAGAGGGTATTAATACAAAAGGTGTTAAAATCATAGGTATGGGTGACCCCTATATTCCATTTTTAGAATGGGAATATACAAGACCAAACTCAAAATTAGATGAATATAAAAAATATTTAAATAAGTGTCAAGGTAGTATAATAACATCAGATAAAAATATAGATATATTCACTAATGGTTTATATGCTGAAAATATAGGTATTTTTGGTAATAGAAGAGCATTATCTCAAAATGGTATAGGACAAATGGACGGTGGTTTTGGTAACTGGATAGAAATTGAAAAAGTTAAAATCCACGGTTGCGGTAATAATGGTATTAACGCTGAATATGGATTAATAACACCTATCATCAATCAATGTTGGATGTACCAAAATGGTAACAATGGTATAAGAATTGGTAAAAACAAAGGAACTTACACTGGTGAAACAAATTGCTTACTAATTGAAAAGTGTTTTATAAACAGAAATGAAAGTCATGGTATTTACTTAGATGTAAAAGGTAGAGCATATACCATTAAGAACAATGACTTAGAACAAAATGGAGAAATGAGCGACCCATTGAGAAATAATAAAGGTACGGATTATAATGACATAGTTTACGGTTGTTATATGAAAGTAGAAGGTGAAGGTGGATTTACTGCTGGTTCAATAGATTTTAGTAACAACTATTCAGAAGAAACTTTAGGTTTATTATACTTAGAAAGTCCCGACAATAAAATATGCCAAGGTGTAAAATTTGAATCTAATATGTGGCGACCATATAATCAAGAATTATATTCAAATGGATTACTGTTAAAAGGTTGGATTGAAGGAATTAAAATTGGTAATAATAATATGTACGGTAGGCATAAAGTAAGAGTTATCAATGCAAATACTTATGGTATTGAAACTGACACAGATATAACAAACCCTGTATATAAAAATAAAAATATATCTATTGAAAAACATTATGACTATAACGGTACAATGGTTGACTTTAGAAGTACAGGAAGAGTTGAAAAATATTCTATTGAAAATATGATACAATCAGCAACTTATGATGGTAGCACATATACCAACGTATATTTAAATAAATCTAGCGTACCGTATGAATTACAAGAGGACGGACAAGGTAATAAATTAATTGGTACAACTTTTTTAACATCAGACGGTACAAGTATTGGTTTAGTTGTTGACTTCTCTTGGACTCATGGACTATTTAAAATCAGAAAAGATAGAACATCATTAATAAAAACTGGTAACGCTAAGTTTATGGAGAATGGTGGTTTTACAACAATAAACGGTGGTAATACACCTGTAAAAATCTATATTGACCATGACAATGAAATAGTAATTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
59df37b64e527fa5bdc0f5da22ba7672d9f7ce732eb0e3fa8e3ab8ff700e524a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6579
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD2 Shin,D. and Ryu,S. 2023-05-24 — GenBank