Protein

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Genbank accession
QXG83174.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MINFNQLETLNKCLIDWNVNYSVYPYNGYTINEVLCQFFDAINKGIITINEYTKLISAIMNWIKDEGLKEEVENALDKMIEDGTFDDIINEKLLGDIMERLDEIENINKEQTKAIEKNTNAIAEIDKLVKSYGFVTVNMFGAKGDGETDDTKAFNDAINYCKERNITSLFIPYGNYLTTGLINATGVNLVGMYKPVIPFLEWEYTRPTSQLDHFEKYFKMCKGSVIGSKDNTIFVGGLDCKNIGLFGNRRKENQSGYLQLEGGYGKGVNMTDCFVSGFGGVGVKADYGLISSQFINTTITQCGKEGLYIGKIKGTYTGETNFLTIERCTIYRNESHGILADVMGRGFNIILNDFEFNGEPSDPQRPKPTSVDDMVFGCKLLVSGNGGFSSGAIKFEGNYTEGTLGMLYIKNTGGTCQGVDINCNMAYPYNTTETENIGIYLDGWIDRINISNNNMYFAKKLVLNGNQIQSIRTDIEPIHGGDTTGSVAWQVTTENGYNKIVMNSLYEEELFSKNGFITREGYHEDGVTHYPFDKSNTHINGVEIDYDDARNPMVGKILILDGNYVGYVHSVSWTQGVINIRGNRVISRTSGNVKFVDCGGFITRDGTGTKRKMVVDWDGTVVGI
Physico‐chemical
properties
protein length:624 AA
molecular weight: 69572,66870 Da
isoelectric point:4,92819
aromaticity:0,10737
hydropathy:-0,30881

Domains

Domains [InterPro]
DC_0396
ATT
1–195
DC_0396 DC_0525
Coil
Unmapped
101–121
Coil IPR011050
IPR024535
ENZ
134–191
IPR024535
IPR012334
STR
135–510
IPR012334
QXG83174.1
1 624
Architecture
ATT
STR
RBD
ATT 1-195 | STR 196-510 | RBD 511-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXG83174.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9850
Central domain 148 517 371 0,9620
C-terminal 518 624 106 0,8274
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-517
C-terminal
518-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage cpx
[NCBI] 		2853265 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXG83174.1 [NCBI]
Genbank nucleotide accession
MW679027 [NCBI]
CDS location
range 9841 -> 11715
strand +
CDS
ATGATTAACTTTAATCAACTTGAAACATTAAACAAATGTCTTATAGACTGGAATGTTAACTATTCTGTCTATCCATATAATGGTTACACAATTAACGAAGTCTTATGTCAGTTTTTCGACGCAATTAATAAGGGAATAATAACAATTAATGAATATACTAAATTGATAAGTGCAATCATGAACTGGATTAAAGATGAAGGATTAAAAGAAGAGGTCGAAAATGCACTTGACAAAATGATAGAGGACGGAACTTTCGACGACATTATAAATGAAAAACTTTTAGGCGACATCATGGAAAGATTAGACGAGATAGAAAACATTAATAAGGAACAGACTAAGGCGATAGAAAAAAATACTAATGCCATAGCAGAAATTGACAAACTTGTCAAGTCTTATGGTTTCGTTACTGTCAATATGTTTGGAGCAAAAGGAGACGGAGAGACAGACGACACAAAGGCTTTCAATGACGCCATAAATTATTGTAAAGAAAGAAACATTACAAGCTTGTTTATTCCATATGGAAATTACTTGACAACTGGTTTAATAAATGCTACAGGTGTTAACTTAGTTGGAATGTATAAACCTGTTATTCCTTTCTTAGAATGGGAATACACAAGACCAACATCACAACTTGACCATTTCGAGAAATATTTTAAGATGTGTAAAGGTTCTGTTATTGGTTCAAAGGATAACACAATCTTTGTAGGTGGTTTAGACTGTAAGAATATAGGACTTTTCGGTAATAGAAGAAAAGAAAATCAAAGCGGATATTTACAACTAGAAGGTGGTTACGGAAAAGGTGTGAATATGACCGATTGTTTTGTTAGTGGTTTTGGTGGTGTAGGTGTTAAAGCCGACTATGGATTGATTAGTTCACAATTCATTAACACAACTATAACACAATGTGGTAAAGAGGGTTTATATATCGGTAAGATAAAAGGTACTTACACAGGTGAAACAAACTTCTTGACAATAGAGCGTTGCACTATCTACAGAAACGAAAGTCACGGAATATTAGCAGATGTCATGGGACGTGGTTTCAACATAATATTAAATGACTTTGAGTTTAACGGTGAACCGTCCGACCCTCAAAGACCTAAGCCAACATCTGTTGACGACATGGTTTTTGGTTGTAAATTACTGGTGAGCGGTAATGGTGGATTTTCAAGTGGAGCAATAAAGTTTGAAGGAAACTACACAGAGGGAACTTTAGGTATGTTATACATTAAGAATACTGGTGGTACTTGCCAGGGCGTCGACATTAATTGTAATATGGCATATCCTTATAACACTACAGAAACGGAAAACATTGGAATTTATTTAGACGGTTGGATAGATAGAATTAACATATCAAATAATAACATGTATTTTGCTAAAAAGCTAGTTTTAAATGGAAACCAAATTCAGTCAATAAGAACAGACATAGAACCAATACATGGTGGAGATACTACTGGAAGTGTAGCATGGCAAGTAACTACAGAAAATGGATATAACAAAATCGTGATGAATAGTTTATATGAAGAAGAACTATTTAGCAAAAATGGTTTCATAACTAGAGAAGGTTACCACGAAGACGGTGTTACACATTACCCATTCGATAAATCAAACACTCATATAAATGGTGTGGAAATTGATTACGACGACGCACGTAACCCAATGGTCGGTAAAATCTTAATATTAGACGGAAACTATGTCGGTTATGTTCATTCAGTTTCATGGACACAAGGCGTTATCAACATACGTGGTAATAGAGTTATCTCACGTACTAGCGGTAATGTTAAGTTTGTTGATTGTGGAGGGTTCATCACTAGAGACGGAACAGGAACAAAAAGAAAAATGGTTGTCGACTGGGACGGTACAGTAGTGGGAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
955f2e673176788e31caeb5e7df4a4ecaf675303aaa5f5831627452d397dbc78
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6737
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A bacteriophage of Clostridium perfringens Buttimer,C.T.H., Colom,J., Neve,H., Pang,R. and Hill,C. 2016-11-29 — GenBank